PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_143450_jkhh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 94aa    MW: 10500.7 Da    PI: 8.5328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_143450_jkhh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.9e-0620611454
                        HHHHHHHHHHHCTSCC.C...TTS-.STCHH..HHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskK.lsKae..iLekAveYIksL 54
                        d+i +  ++L++l+P+ +   +s++  +K++  +L+++++YI+sL
  Bv6_143450_jkhh.t1 20 DQIADLVHKLQQLIPEiR---GSRRnSDKSAnrVLQETCNYIRSL 61
                        6899999*********99...6666566664449*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-72079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-72075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSSRRSRSRQ SGGVSGISDD QIADLVHKLQ QLIPEIRGSR RNSDKSANRV LQETCNYIRS  60
LHREVDDLSD RLAELLASTD SDSAQAAIIR SLFM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681766.11e-60PREDICTED: transcription factor PRE3
SwissprotQ9LJX13e-34PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K9R0852e-43A0A0K9R085_SPIOL; Uncharacterized protein
STRINGXP_010681766.15e-60(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-34bHLH family protein