PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_143880_mzts.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 302aa    MW: 34021.1 Da    PI: 5.8286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_143880_mzts.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.91.4e-1789194290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeit...krtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgk 75 
                          Y+ ++  +GFs+rk +s+  + +g+++   ++ fvCs++gk++ +++               +++++r+  +t+tgC+a+++vk++++g 
  Bv6_143880_mzts.t1  89 LYRLHSGALGFSIRKYTSRIGRVEGNVYltkEKYFVCSCHGKPDGQSDFvsvpdvvvdedgneRKRKQRRVIVTKTGCNAMMRVKLNDSGM 179
                         6999999************998888764222678**********998889***********766666667789****************** PP

                FAR1  76 wevtkleleHnHela 90 
                         +ev+  +l HnHel+
  Bv6_143880_mzts.t1 180 YEVIGHVLVHNHELT 194
                         *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1489194IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDYEMYEGFE EFLLADAADN ESESANQVIH NQLEVVDATH NENEPLDAMI HNQLQPVDSI  60
VEECTEDELD ISGSLIGVQK KTIEELYELY RLHSGALGFS IRKYTSRIGR VEGNVYLTKE  120
KYFVCSCHGK PDGQSDFVSV PDVVVDEDGN ERKRKQRRVI VTKTGCNAMM RVKLNDSGMY  180
EVIGHVLVHN HELTRTEWQH YHRSERAIGD GKAKEITVMT EASMRPAVQY RYECDSESGV  240
GESTASNSST VTVFDPPWVK TKGRSVRPKS GIEKSKRGRG RGKCVSNVAK EFGSYTPPAR  300
LF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102805.11e-169PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010665808.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-08FAR1-related sequence 5