PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_145140_chao.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 927aa MW: 103042 Da PI: 5.7081

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_145140_chao.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.8	2.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl +l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Bv6_145140_chao.t1 598 AEKTVSLGVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.927	582	669	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	602	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-22	821	911	No hit	No description
SMART	SM00666	4.2E-19	827	909	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.9E-24	827	909	No hit	No description
PROSITE profile	PS51745	20.517	827	909	IPR000270	PB1 domain
CDD	cd06407	1.26E-33	828	908	No hit	No description
Pfam	PF00564	1.7E-16	828	908	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MEYSFSPKEK GHSFWSSTSP QSDIPMSVDN EGMNSTEQFG NMSEMMTLDG YAGWCNNPTS 60 NEQLFASYVY SSLPPMPSNY AAYDHLSFAE PNNSAFSMND NECSNQNNNV FGSSLNYADK 120 MTFPHKDAQL SPNFGPLENN DTSSKQENMF VLSQNIVPRP LGHSLPERML RALSLFKESS 180 GGGILAQVWV PIRAGDHYIL STCEQPYLLD QMLLGYREVS RSYTFSVEQK PGSFPGLPGR 240 VFISKLPEWT SNVSYYSSAE YLRGKHALDH EVRGSVAIPI FLPSERSCAA VLELVTVREK 300 SNFDEEMESV CRALKAVDLR TATPPRLLPQ RLSVNQKSAL VEITDVLRAV CHAHRLPLAL 360 TWIPCTYDEE EGDQVFRIQV QDNSLNLNKK PVLCIEETAC YVNDKEKQGF VPACAEHFLE 420 EGQGVAGKAL QSNLPFFFPD VKNYHISEYP LVQHARKFGL SAAVAIRLRS TYTGNDDYIL 480 EFFLPLNIKG NKEQQLLLDS LAGTMQRICR SLRTVTEAEL VGSPESKIEH CGVSQCFFPK 540 DLPLMSSPQL FGQSGSNGTE QMTLNRPSLK NDCIKEDGIS EQASGGSRRP MEKKRSTAEK 600 TVSLGVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVEGVEGGL KFDPTTGELV AATGSVIQEL DARKSLFLPS KSVPAKNCEA TKQDEMCFPP 720 ATCFNGEYPS VKLERDSFII TGHQSARGVT MFDAETRKHD LKKSGYRIAR EEVESDDGGF 780 MENNQASSSG MTDSSNASGS MSSSPNSNDK RRQFKDKMSN EDAAGSRITI KATYREDTVR 840 FKFEPSAGCL HLYEEVANRF KVELGTFQLK YLDDEEEWVM LVSDSDLQEC LEIMEFLGKS 900 SIKFLVRDMP CGMGSSGGSN CFLAGSC

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MEYSFSPKEK GHSFWSSTSP QSDIPMSVDN EGMNSTEQFG NMSEMMTLDG YAGWCNNPTS  60
NEQLFASYVY SSLPPMPSNY AAYDHLSFAE PNNSAFSMND NECSNQNNNV FGSSLNYADK  120
MTFPHKDAQL SPNFGPLENN DTSSKQENMF VLSQNIVPRP LGHSLPERML RALSLFKESS  180
GGGILAQVWV PIRAGDHYIL STCEQPYLLD QMLLGYREVS RSYTFSVEQK PGSFPGLPGR  240
VFISKLPEWT SNVSYYSSAE YLRGKHALDH EVRGSVAIPI FLPSERSCAA VLELVTVREK  300
SNFDEEMESV CRALKAVDLR TATPPRLLPQ RLSVNQKSAL VEITDVLRAV CHAHRLPLAL  360
TWIPCTYDEE EGDQVFRIQV QDNSLNLNKK PVLCIEETAC YVNDKEKQGF VPACAEHFLE  420
EGQGVAGKAL QSNLPFFFPD VKNYHISEYP LVQHARKFGL SAAVAIRLRS TYTGNDDYIL  480
EFFLPLNIKG NKEQQLLLDS LAGTMQRICR SLRTVTEAEL VGSPESKIEH CGVSQCFFPK  540
DLPLMSSPQL FGQSGSNGTE QMTLNRPSLK NDCIKEDGIS EQASGGSRRP MEKKRSTAEK  600
TVSLGVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVEGVEGGL KFDPTTGELV AATGSVIQEL DARKSLFLPS KSVPAKNCEA TKQDEMCFPP  720
ATCFNGEYPS VKLERDSFII TGHQSARGVT MFDAETRKHD LKKSGYRIAR EEVESDDGGF  780
MENNQASSSG MTDSSNASGS MSSSPNSNDK RRQFKDKMSN EDAAGSRITI KATYREDTVR  840
FKFEPSAGCL HLYEEVANRF KVELGTFQLK YLDDEEEWVM LVSDSDLQEC LEIMEFLGKS  900
SIKFLVRDMP CGMGSSGGSN CFLAGSC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682023.1	0.0	PREDICTED: protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0J8C6U7	0.0	A0A0J8C6U7_BETVU; Uncharacterized protein
STRING	XP_010682023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]