PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_145210_uijh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 701aa    MW: 80116.9 Da    PI: 8.0442
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_145210_uijh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2182175190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +++k +r+r+++r+gC+a l+++k++    ++w+vt ++++HnH
  Bv6_145210_uijh.t1  82 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKVANENKPQRNRKSSRCGCQAYLRISKNTelgLSEWRVTGFVNHHNH 172
                         6**************9998877356667999*****************9***********************977779************* PP

                FAR1  88 ela 90 
                         el 
  Bv6_145210_uijh.t1 173 ELL 175
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-1882175IPR004330FAR1 DNA binding domain
PfamPF105514.3E-19298388IPR018289MULE transposase domain
PROSITE profilePS509669.804573609IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-8575607IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-5584611IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MSVASLLDLG GVKNGMLNEV DRPIVVYDEQ SDQRCLSLDD TSSADDSPNN NNNNDVGVSY  60
ELTTDAVPYI GQRFTSHDAA YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA  120
GNTPAKVANE NKPQRNRKSS RCGCQAYLRI SKNTELGLSE WRVTGFVNHH NHELLEPNQV  180
RFLPAYRTIS EGDKSRICMY AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLIQSFR  240
KVDHEEDSID LLRMCRSIKE KDHNFRFEYT VDSNNNLENI SWSYASSVQA YEVFGDAVVF  300
DTTHRLTAFD MPLGIWVGIN NYGMPCFFGC VLLREENLRS LSWALKVFIG FMNGKAPKTI  360
LTDQNMCLKE AVTVEMPTTK HALCIWLVVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI  420
DEFELGWRDM VNSFALHTNR HVANLFALRS LWALSYLRNH FMAGLTTTGQ SKAINAFIQR  480
FLSAQTRLAH FVEQVAVAVD FKDQAGEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS  540
KLQEQLVLAS HYASFQMDDG FLVRHHTKLQ GGRKVYWDLR EGVISCSCDH FEFSGILCRH  600
ALRVLSTGNC FQIPERYLPL RWRRVNSSTN KLQSTLNDHG EKVQRLQAMV STLVSESSKS  660
KERLDLATEQ VSILLSRVRE QSVSSSLVSR DSTMHKNFNI Y
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682037.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0J8C3220.0A0A0J8C322_BETVU; Uncharacterized protein
STRINGXP_010682037.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]