PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_145550_jkxz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 518aa    MW: 58496.7 Da    PI: 7.1979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_145550_jkxz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49591842128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eelv +yL++kvegkk+++ + i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Bv6_145550_jkxz.t1  59 MPGFRFHPTEEELVEFYLRRKVEGKKFNV-DLITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 148
                         79***************************.99***************8778899************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Bv6_145550_jkxz.t1 149 RGENSRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 184
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.51658205IPR003441NAC domain
SuperFamilySSF1019411.26E-5558204IPR003441NAC domain
PfamPF023651.2E-2460184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAIATTMNLT NVDINNTNNN NNNNNNNNNN VANNDKQQQQ QQQDQPQHDE DEHEHDMVMP  60
GFRFHPTEEE LVEFYLRRKV EGKKFNVDLI TFLDLYRYDP WELPALAAIG EKEWFFYVPR  120
DRKYRNGDRP NRVTTSGYWK ATGADRMIRG ENSRPIGLKK TLVFYSGKAP KGIRTSWIMN  180
EYRLPQHETE RYQKAEISLC RVYKRAGVED HPSVPRGSSL PSRLSSSSKA TSSSSDRKNY  240
HNAFRAQTTC LQQQQMEQQP PQMEKVSETD ASSSTEVGTA LGLSHHSSYT AVSPMAAPQQ  300
SLTPPPPQPQ QQQPPPPLIE VNRMMQLLND HNHNLKQQHQ VVGGGHGVIN TSMPSSVNTS  360
IFMGNSTSAT GGLGLVHHQP SMEEIHRLVE YQQACINHHF QQQQQQQPPQ PAPQQQQQQQ  420
QQLQFQFEAL NSSSNPSSTG SSTNNMPFLF SNYLFSPAQT TVVNNPLTPQ TASSSTSLQL  480
PPVTVASAAA GLAFSDRSLW DWNPYSEPNR DHFSNLFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-536020522168NAC domain-containing protein 19
3swm_B1e-536020522168NAC domain-containing protein 19
3swm_C1e-536020522168NAC domain-containing protein 19
3swm_D1e-536020522168NAC domain-containing protein 19
3swp_A1e-536020522168NAC domain-containing protein 19
3swp_B1e-536020522168NAC domain-containing protein 19
3swp_C1e-536020522168NAC domain-containing protein 19
3swp_D1e-536020522168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682089.10.0PREDICTED: NAC domain-containing protein 35
TrEMBLA0A0K9RMX90.0A0A0K9RMX9_SPIOL; Uncharacterized protein
STRINGXP_010682089.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-108NAC domain containing protein 35