PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_145940_kddw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 659aa    MW: 73156.9 Da    PI: 5.869
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_145940_kddw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.9e-22123223198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F  
  Bv6_145940_kddw.t1 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHSNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL- 210
                         99****************************964333..4459************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  Bv6_145940_kddw.t1 211 -RGENGELRVGVRR 223
                         .449999*****97 PP
2Auxin_resp113.81.6e-37249331183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aaha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d+++++W+nS+WrsLk
  Bv6_145940_kddw.t1 249 AAHAIQTGTLFSVFYKPRTSRSEFLVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVNDTSSSSWENSEWRSLK 331
                         79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-43115252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39117238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-19121223No hitNo description
PROSITE profilePS5086310.757123225IPR003340B3 DNA binding domain
SMARTSM010193.9E-21123225IPR003340B3 DNA binding domain
PfamPF023621.8E-19123223IPR003340B3 DNA binding domain
PfamPF065071.0E-34249331IPR010525Auxin response factor
SuperFamilySSF542771.67E-11530612No hitNo description
PROSITE profilePS5174527.966535628IPR000270PB1 domain
PfamPF023099.4E-7579625IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MALQGTHRSG GRPEQDALYK ELWFACAGPL VNVPREGERV YYFPQGHMEQ LEASTHQGLD  60
QQMPSFNLPS KILCKVANIE LRAEPETDEV YAQITLVPER DQSEVTKPDA PVPDPPRCNV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHS NEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQLNN MPSSVISSHS  240
MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD  300
EVPERRFSGT IVGVNDTSSS SWENSEWRSL KVQWDEPSSI VRPERVSPWE LEPLVATNAS  360
NTQPTTQRNK RPRPAVMPSS ATDLSALGIW KSPGESPVAA SAEVERTRDQ FSSVTKAGSA  420
GFTANSSLPA ISSQSIYWSN RADNASESLG SVVNKESGEK RKSSGAGCRL FGIQLFDHSN  480
LDESSTGVDE DLPVPSLEAE SDRSNVNRSD VPSLSCDPDK SSQRSPSESQ SKQSRTCTKV  540
HMQDVAVGRA VDLTRFECYE DLLKKLELLF DIKGELCCSS GKWQVVYTDD EDDMMMVGDD  600
PWHEFCSMVK KIFIYTSEEV KRLSPKSKIS VEEDAKPGYV DADLPAASEE QSSAVGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033541355Auxin response factor 1
4ldw_A0.033541355Auxin response factor 1
4ldw_B0.033541355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682136.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0K9R8S60.0A0A0K9R8S6_SPIOL; Auxin response factor
STRINGXP_010682136.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]