PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_146520_achh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 323aa    MW: 36527 Da    PI: 5.8335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_146520_achh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-192776255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Bv6_146520_achh.t1 27 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 76
                        577******.**********965...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.7E-342790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-292784IPR001471AP2/ERF domain
CDDcd000183.19E-302783No hitNo description
PROSITE profilePS5103220.6392784IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-202885IPR016177DNA-binding domain
PRINTSPR003674.5E-82839IPR001471AP2/ERF domain
PfamPF008475.9E-123076IPR001471AP2/ERF domain
PRINTSPR003674.5E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MFKSKSSKTT PPQHQQQHES PNNPPIKFLG VRRRPWGRYA AEIRDPSTKE RHWLGTFDTA  60
EEAALAYDRA ARSMRGPRSR TNFVYSDMPA GSSVTTIPSP DERQRQHEHK HEHELQHNQP  120
ESFSLSTGNG HEVWSSSSSY NQQNHTIYSN VSSNDDITMN SNINGCSANY NYNDIELPPL  180
PDQYTGEMGQ GSWTDPFGDP TVGGLTSADY MGFDSTTAGA GDTQDAKVLK ESQTDLHEDL  240
SNLELRQKEF EAAAEYKQIH SAYISFLAQK AKMKWSIEGD ENSIVFHNFI KARILHNIVF  300
SIHDKDSNWK ENIIEVNDAF SLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-192883359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682226.11e-166PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A0K9R5Y49e-69A0A0K9R5Y4_SPIOL; Uncharacterized protein
STRINGXP_010682226.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-31ERF family protein