PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_147790_aiuf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 226aa    MW: 25663.5 Da    PI: 9.3019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_147790_aiuf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C k F ++  L  H++ H
  Bv6_147790_aiuf.t1 59 FECQYCYKEFANSQALGGHQNAH 81
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-55585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-65586No hitNo description
PfamPF139126.2E-65983IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.515986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MESKLRLFGF ELDTYKNNEG EESTNSSNTV SSGNKEKSDD NNRRCSSVNN IIEIEQKKFE  60
CQYCYKEFAN SQALGGHQNA HKKERMKKKR LQLQARKASM NFYLQPYHQN LMKNNSSSSS  120
SSGSLWYFDP SYYAPASDNH FSLYEESQIS FGTFDQDHHR HQTAALQQFT VTNGSRCTTE  180
SRPAVIVKPN PLAVAKKSCK SNLDLQLGLS LDSNVIKSSS IARKFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682396.11e-169PREDICTED: zinc finger protein 5
TrEMBLA0A438EHX02e-62A0A438EHX0_VITVI; Zinc finger protein 5
TrEMBLA0A438JN922e-62A0A438JN92_VITVI; Zinc finger protein GIS3
STRINGXP_010682396.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-18zinc finger protein 5