PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_148590_xhag.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

YABBY

Protein Properties

Length: 201aa MW: 22979.8 Da PI: 5.5148

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_148590_xhag.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	209	1.6e-64	7	179	3	169
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelk..veeenlksnve 87 +f++ eq+CyvqCnfC+til+vsvP++s+++v+tvrCGhCt llsvn+ kas +l +a ++ + + ++e +++ k +++++++ + Bv6_148590_xhag.t1 7 LFDAQEQICYVQCNFCTTILLVSVPYNSMSMVMTVRCGHCTGLLSVNMLKASfvplHLFSALNQDQLNKHQEEVDTSKviMDRHSTTLSML 97 7899******************************************9998777777777666444444443443331134444444444 PP YABBY 88 keesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++++ ++ + + +e+ de++ + v++PPek++r+Psaynrfikeei+r+ka P++sh+eafs+aaknWahfP + +g Bv6_148590_xhag.t1 98 PSSEEDNDDKDDE-EEEVDEDIIALEHtVNKPPEKKRRAPSAYNRFIKEEIRRLKARFPNMSHKEAFSTAAKNWAHFPSVQHG 179 4444444444433.55555665555444************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-62	10	179	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	125	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.0E-6	126	174	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MATLNRLFDA QEQICYVQCN FCTTILLVSV PYNSMSMVMT VRCGHCTGLL SVNMLKASFV 60 PLHLFSALNQ DQLNKHQEEV DTSKVIMDRH STTLSMLPSS EEDNDDKDDE EEEVDEDIIA 120 LEHTVNKPPE KKRRAPSAYN RFIKEEIRRL KARFPNMSHK EAFSTAAKNW AHFPSVQHGV 180 DEENGSHGNR HMTHNFEEEA G

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682526.1	1e-151	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	4e-59	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	D7TDI7	1e-74	D7TDI7_VITVI; Uncharacterized protein
STRING	XP_010682526.1	1e-151	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-57	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]