PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_148590_xhag.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family YABBY
Protein Properties Length: 197aa    MW: 22452.2 Da    PI: 5.7272
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_148590_xhag.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY188.63.2e-5871753169
               YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelk..veeenlksnve 87 
                         +f++ eq+CyvqCnfC+til+vsvP++s+++v+tvrCGhCt llsvn+ kas    +l +a ++ + + ++e +++ k  +++++++  + 
  Bv6_148590_xhag.t2   7 LFDAQEQICYVQCNFCTTILLVSVPYNSMSMVMTVRCGHCTGLLSVNMLKASfvplHLFSALNQDQLNKHQEEVDTSKviMDRHSTTLSML 97 
                         7899********************************************9998777777777666444444443443331134444444444 PP

               YABBY  88 keesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                          ++++ ++ +  + +e+ de++    + v++PPek++r+Psaynrfik    r+ka  P++sh+eafs+aaknWahfP + +g
  Bv6_148590_xhag.t2  98 PSSEEDNDDKDDE-EEEVDEDIIALEHtVNKPPEKKRRAPSAYNRFIK----RLKARFPNMSHKEAFSTAAKNWAHFPSVQHG 175
                         4444444444433.55555665555444******************86....9*************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-5510175IPR006780YABBY protein
SuperFamilySSF470954.71E-5127169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MATLNRLFDA QEQICYVQCN FCTTILLVSV PYNSMSMVMT VRCGHCTGLL SVNMLKASFV  60
PLHLFSALNQ DQLNKHQEEV DTSKVIMDRH STTLSMLPSS EEDNDDKDDE EEEVDEDIIA  120
LEHTVNKPPE KKRRAPSAYN RFIKRLKARF PNMSHKEAFS TAAKNWAHFP SVQHGVDEEN  180
GSHGNRHMTH NFEEEAG
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682526.11e-130PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT36e-54YAB4_ARATH; Axial regulator YABBY 4
TrEMBLD7TDI73e-69D7TDI7_VITVI; Uncharacterized protein
STRINGXP_010682526.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-52YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]