PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_148810_gqfm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 457aa    MW: 51094.2 Da    PI: 5.3556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_148810_gqfm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12282324754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           Er+RR+ri +++  Lr l+Pk      +K+ Ka++L  A++YI +L
  Bv6_148810_gqfm.t1 282 LTERNRRQRIHDGILSLRALVPKI-----TKMHKAATLSDAIDYILEL 324
                         57*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-1711158IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.82E-11273329No hitNo description
PROSITE profilePS5088814.583275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15275341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14277341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9281324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-5391454No hitNo description
SuperFamilySSF550219.58E-6391454No hitNo description
PROSITE profilePS5167110.677392457IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSHLNRALEC LRPLILDSNT WDYCVLWKLG DDPSRFIEWI GCCCNGGGKQ EIGLKKRNKD  60
KCNSIQVCRD VNFVHLANTK SCEALAKLPL FLSVYSGLHG EVAISCLPRW LTIDSTKSTQ  120
ESCGTHVLIP VFGGLVELYS SKLIEEDESI IEYVKSQFTI KSELETMSTS TISFDEQSID  180
PVFDRSTNIC LSSLNQSNIL AWPQQPLIQI APLYSDSTLD VSSTGSFPSD ERPSPDSNWS  240
SVSHDIPLQP VTACHEDSII LKNKMDSRLK PERGHCKSKN LLTERNRRQR IHDGILSLRA  300
LVPKITKMHK AATLSDAIDY ILELNNEIKE LQSELRSLTE EEDCDENNIL KLETSHLDAK  360
VSKPKQANSP LTERPNLEVD VQVNQLGIGN FLVKIVCQQQ PGVFTKLLEA LGSLGLPIQD  420
ANLTTCDGKV STIFTVQSNK KEIQEQDLRD SLARMIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682551.10.0PREDICTED: transcription factor bHLH90
TrEMBLA0A0K9RVS10.0A0A0K9RVS1_SPIOL; Uncharacterized protein
STRINGXP_010682551.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-69bHLH family protein