PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_149630_ammr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 290aa    MW: 31837.7 Da    PI: 9.244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_149630_ammr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-1972121255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f tae Aa a+++a++k++g
  Bv6_149630_ammr.t1  72 HYRGVRQRP-WGKWAAEIRDP----IKaARVWLGTFETAEAAAIAYDEAALKFKG 121
                         7********.**********7....357************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-3271130IPR001471AP2/ERF domain
SMARTSM003809.7E-3772135IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2272130IPR016177DNA-binding domain
CDDcd000187.59E-2172130No hitNo description
PROSITE profilePS5103224.71172129IPR001471AP2/ERF domain
PfamPF008479.3E-1372121IPR001471AP2/ERF domain
PRINTSPR003672.7E-117384IPR001471AP2/ERF domain
PRINTSPR003672.7E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVSALAQIMD TSSTHQPQPQ PQPQPQPPSS LSLSSSSSIT HEAYAKTSQN LYPSQQLQDQ  60
APVGGGSGRK RHYRGVRQRP WGKWAAEIRD PIKAARVWLG TFETAEAAAI AYDEAALKFK  120
GTKAKLNFPE RVIYGHPHYY SANQTATTAT ATTTTATTNM ARTTHGHGHG HGPTTNTNNT  180
TTSNNMYPDL VQYAQLLSSN DVNFPYFMSS LYPQSTYNTA DTSNYHSIST SQSTPSSTST  240
NRVELPQPPP HYQEWNFERF STSSTNTSTS SSSPHYYTSS FKRPGSDADI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2671132163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682635.10.0PREDICTED: ethylene-responsive transcription factor ERF113 isoform X1
STRINGXP_010682635.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-30ERF family protein