PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_149840_tdcj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 279aa    MW: 32155.5 Da    PI: 6.0443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_149840_tdcj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.8e-11156203455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i s++  L++l+P +    +k   K+ iL   ++YI+sLq
  Bv6_149840_tdcj.t1 156 SHSLAERVRRQKISSKMKLLQSLVPGC----DKTTGKVPILDTIINYIHSLQ 203
                         79************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-9150207No hitNo description
SuperFamilySSF474593.01E-16150218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.024152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSASWYQQSS PCLCLRDDEQ HPYLHPADNF YESSCTNNNS NAMSHNINSD FSWIRDNFTT  60
FEDFSHFYDN HQAVPYVLTA VSDNNKNSVH FQETSQDKKI SRQRNRRNDM KEDNVCRTRS  120
SGKKGKERTN YDEQDATVNE DGFVYVRARR GEAVDSHSLA ERVRRQKISS KMKLLQSLVP  180
GCDKTTGKVP ILDTIINYIH SLQDQVKSLM EELALVDPTF DVNYLALESS MMQTQESYAT  240
TAGSECTRRT SQYRSIPLHE SSAFPSPWLA LLEEREYTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6621611e-153HQ662161.1 Beta vulgaris cultivar US H20 putative cryptochrome-interacting basic helix-loop-helix 5 (CIB5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682661.10.0PREDICTED: transcription factor BEE 2
TrEMBLI6MJ731e-160I6MJ73_BETVU; Putative cryptochrome-interacting basic helix-loop-helix 5 (Fragment)
STRINGXP_010682661.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-34bHLH family protein