PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_149850_ejzf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 207aa    MW: 23787.6 Da    PI: 8.2262
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_149850_ejzf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-101352012689
                         T..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  26 h..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         h  ++++++++ l +ed e+ ++W ++++y  +++s+ + l+ G+++F + +g+k+gD +v++ d+ ++
  Bv6_149850_ejzf.t1 135 HlpSIESRQGVRLYMEDkETRETWCFRFRYriTNNSKVHSLE-GTRQFLQVHGMKAGDYIVIYKDD-ER 201
                         366566779999*****66669******99888888889999.*******************9433.43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.86E-667115No hitNo description
Gene3DG3DSA:2.40.330.101.7E-9131204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-7131205IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MIPGGFRGNT AGFKPLSSPE VQGDSDCVGG GALGGSPIMS CGNSWVWPPP KIKNYDEGTC  60
SCVVSQIQQQ QQQQQQQQQQ QQQQQQQQIQ QQQQQKLRIL SFNSLMIPST DHHHSEIHSS  120
FIPPPVYHPR DAEIHLPSIE SRQGVRLYME DKETRETWCF RFRYRITNNS KVHSLEGTRQ  180
FLQVHGMKAG DYIVIYKDDE RRRYVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-1613020525100B3 domain-containing transcription factor FUS3
6j9b_D5e-1613020525100B3 domain-containing transcription factor FUS3
Search in ModeBase
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.19e-17B3 family protein