PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150040_hdfh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 303aa    MW: 33975.7 Da    PI: 8.3623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150040_hdfh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51141451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp +   + +e yfFs+r+ ky++g+r+nrat sgyWkatgkdk+
  Bv6_150040_hdfh.t1  14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SIIPEVDVCKSDPWDLPGN-GDKGQERYFFSTREAKYPNGNRSNRATVSGYWKATGKDKA 102
                         79****************************.89***************44.4567899********************************* PP

                 NAM  92 vlsk..kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                         v++   +  +      vg+kktLvfy+g+ p+g++tdW+mheyrl
  Bv6_150040_hdfh.t1 103 VVTGgrS--NnnssfiVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 145
                         **97431..3567788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-5910185IPR003441NAC domain
PROSITE profilePS5100556.30814185IPR003441NAC domain
PfamPF023651.4E-2715145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERMNFVKDG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASIIPEVD VCKSDPWDLP  60
GNGDKGQERY FFSTREAKYP NGNRSNRATV SGYWKATGKD KAVVTGGRSN NNSSFIVGMK  120
KTLVFYRGKP PHGSRTDWIM HEYRLIDTNQ TQITPQTLNS PFKKTLLQKT GEATGDWVLC  180
RIFLKKRNNA ATKNDHEAEE GIVCEEEDNN NNNNKVDHKR LGKPVFYDFL ARNSGGVGAT  240
DLNLPAPCSS SSGSSAVTDV DGTNNNHHHN HNNNVDTNEE SSEERDESSS SSCNSFTYLR  300
KKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-491219015169NO APICAL MERISTEM PROTEIN
1ut4_B6e-491219015169NO APICAL MERISTEM PROTEIN
1ut7_A6e-491219015169NO APICAL MERISTEM PROTEIN
1ut7_B6e-491219015169NO APICAL MERISTEM PROTEIN
3swm_A6e-491219018172NAC domain-containing protein 19
3swm_B6e-491219018172NAC domain-containing protein 19
3swm_C6e-491219018172NAC domain-containing protein 19
3swm_D6e-491219018172NAC domain-containing protein 19
3swp_A6e-491219018172NAC domain-containing protein 19
3swp_B6e-491219018172NAC domain-containing protein 19
3swp_C6e-491219018172NAC domain-containing protein 19
3swp_D6e-491219018172NAC domain-containing protein 19
4dul_A6e-491219015169NAC domain-containing protein 19
4dul_B6e-491219015169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682684.10.0PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY939e-85NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0K9RXF01e-143A0A0K9RXF0_SPIOL; Uncharacterized protein
STRINGXP_010682684.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-86NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]