PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_150370_whxc.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 210aa MW: 22706.8 Da PI: 4.8621

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_150370_whxc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	77.4	3.9e-24	1	85	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...................k 89 ++a+caar+F+L++eLG+++d++ti+WLlqq+++ai++ tg+++ +as+ +++ss+s++s +++ Bv6_150370_whxc.t1 1 MPALCAARIFQLTRELGHKSDGETIQWLLQQSEQAIIATTGSGTMPASFLsSSVSSVSEQS-TTISsgisgisggfslinanlgrT 85 9**********************************************88844444444433.222234445555555555555540 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	19.986	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.8E-20	1	137	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MPALCAARIF QLTRELGHKS DGETIQWLLQ QSEQAIIATT GSGTMPASFL SSSVSSVSEQ 60 STTISSGISG ISGGFSLINA NLGRTHFQSG SWPYGSSSVH DSGFSIRDNL DSRNKLGVQG 120 LGMSNLNMGL VNFGQQQQQQ QQQGRDSLEL GLSQDNVGFG VFNYGTINQM YQQLRQNNNN 180 NNNREEVDFG NDQQQKFLDD GIGGASQTSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682712.1	1e-149	PREDICTED: transcription factor TCP20-like
TrEMBL	A0A0K9S1K9	1e-91	A0A0K9S1K9_SPIOL; Uncharacterized protein
STRING	XP_010682712.1	1e-148	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-23	TCP family protein