PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150450_zeyz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 236aa    MW: 27805.3 Da    PI: 8.009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150450_zeyz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32157215159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  Bv6_150450_zeyz.t1 157 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLSNDEAVVVTTYEGIHSHS 215
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-33142215IPR003657WRKY domain
SuperFamilySSF1182902.35E-29149216IPR003657WRKY domain
PROSITE profilePS5081129.849152217IPR003657WRKY domain
SMARTSM007747.0E-39157216IPR003657WRKY domain
PfamPF031062.6E-26158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENYSIFSSS TNSSTSSPTN SNFPFSLSQV SSTSNNSFDH HHDLHHHHHV VDHYHDHHDG  60
NQSQPLMMGD QHQIQVPNMV VHHQSHLMNN YHDDHHGITH NYHEDNNNND DQNKRINMVN  120
DHHNSNNNKM IKKGSMEKKK VKKHRYAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY  180
YRCTYQGCNV KKQVQRLSND EAVVVTTYEG IHSHSIERST DNFEHILTQM QIYNSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25149216976Probable WRKY transcription factor 4
2lex_A1e-25149216976Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7090021e-44JF709002.2 Dimocarpus longan WRKY transcription factor B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682719.21e-173PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A0K9QLB01e-72A0A0K9QLB0_SPIOL; Uncharacterized protein
STRINGXP_010682719.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.19e-59WRKY DNA-binding protein 75