PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_150570_hsih.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

CAMTA

Protein Properties

Length: 970aa MW: 107658 Da PI: 5.5536

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_150570_hsih.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.4	3.6e-55	14	127	3	116
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++rwlk+ e++ iL+n++++++t+e++++p+sgs++L+n++++r+frkDGysw+kkkdg+tv E+he+LKvg+ e+l+cyYah+eenpt Bv6_150570_hsih.t1 14 AAQTRWLKPVEVLFILQNHANYQITQEAPQKPPSGSVFLFNKRVLRFFRKDGYSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEENPT 104 4499************************************************************************************* PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L++e+e+ivlvhy+e Bv6_150570_hsih.t1 105 FQRRSYWMLDREYEHIVLVHYRE 127 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.025	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.2E-74	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-48	15	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.8E-9	403	491	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.7E-18	406	490	IPR014756	Immunoglobulin E-set
CDD	cd00102	4.74E-7	406	490	No hit	No description
Pfam	PF01833	4.0E-9	407	489	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	2.0E-13	600	694	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.459	600	692	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.71E-15	604	694	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.83E-12	605	692	No hit	No description
Pfam	PF12796	2.1E-7	607	693	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0054	633	662	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.686	633	665	IPR002110	Ankyrin repeat
SMART	SM00248	1600	672	701	IPR002110	Ankyrin repeat
SMART	SM00015	57	750	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.51	751	780	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.51E-7	802	862	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.0094	810	832	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.389	811	840	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0035	813	831	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.2E-4	833	855	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.194	834	858	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.4E-5	836	855	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MQSSGYDINE LLQAAQTRWL KPVEVLFILQ NHANYQITQE APQKPPSGSV FLFNKRVLRF 60 FRKDGYSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE ENPTFQRRSY WMLDREYEHI 120 VLVHYREITE GKLSSGSMAE LSSGTSSLFS QSPSAYTIQK PVSSCLSDVH ESYQSYSSPG 180 SIEVSSDATM GTGIDCLSGS NPTVNMSMSS DFEVSQALRR LEVQLSLDGD SVKEYAPVDD 240 QDGNEDLYGV LDDLYDSRYA EALSKSNGPS QQEYSGGNEV HHDVTPGMVQ SIKNGESLCW 300 KGFLELSKDS LNLNEEGEKA YILNEIEKEP SSSGRTAEPV NHQPQAFEAQ IAGKWTEAAK 360 DMDMLTYSPQ IYSSVPELSN MLLDSNLGMS LGADSSLTVA KEQKFTICEI SPEWGFADDS 420 TKVVIIGSFL CDPSESRWLC MFGDVEVPLQ IVQNGVLLCQ APPHPSGKVT LCITSGNRES 480 CSEIREFEYR NKHRTCIQCD KHGAETTRST EEMLLLVRLV QMLLSDSLLR QGEGNELGAD 540 KQKINCDSWN QIIESLLVGG ATSVDTLDWL LQQLLKDKLQ LWLSSRPIEG GGGDCSLSRK 600 EQGIIHMVAG LGYEWALNPI LECGVGINFR DINGWTALHW AARFGREKMV ASLIALGASA 660 GALTDPSSHD PTGRNAAYIA ATSGHKGLAG YLSELALTSH LSSLTLEESV LSKGSADVEA 720 ELTINNISKE NVNSTEDQLS LKHTLAAVRN AAQAAARIQS AFRAHSFRKR RHRGTTSLMA 780 ITDLDEYGFS ENDIQGLSAA SKLAFHNLHD HQKAALSIQK NYRGWKGRKD FLTLRQKVVK 840 IQAHVRGYQV RKKYKVICWA VGILDKVVLR WRRKGVGLRG FKPESDHVDE DEDDDDVIKV 900 FRKEKVNVAI DEAVTRVLSM VESPEAQQQY HRMLGRFQEA KAELQGLTSP EASGSEDSLL 960 NMTNDDKFVH

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MQSSGYDINE LLQAAQTRWL KPVEVLFILQ NHANYQITQE APQKPPSGSV FLFNKRVLRF  60
FRKDGYSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE ENPTFQRRSY WMLDREYEHI  120
VLVHYREITE GKLSSGSMAE LSSGTSSLFS QSPSAYTIQK PVSSCLSDVH ESYQSYSSPG  180
SIEVSSDATM GTGIDCLSGS NPTVNMSMSS DFEVSQALRR LEVQLSLDGD SVKEYAPVDD  240
QDGNEDLYGV LDDLYDSRYA EALSKSNGPS QQEYSGGNEV HHDVTPGMVQ SIKNGESLCW  300
KGFLELSKDS LNLNEEGEKA YILNEIEKEP SSSGRTAEPV NHQPQAFEAQ IAGKWTEAAK  360
DMDMLTYSPQ IYSSVPELSN MLLDSNLGMS LGADSSLTVA KEQKFTICEI SPEWGFADDS  420
TKVVIIGSFL CDPSESRWLC MFGDVEVPLQ IVQNGVLLCQ APPHPSGKVT LCITSGNRES  480
CSEIREFEYR NKHRTCIQCD KHGAETTRST EEMLLLVRLV QMLLSDSLLR QGEGNELGAD  540
KQKINCDSWN QIIESLLVGG ATSVDTLDWL LQQLLKDKLQ LWLSSRPIEG GGGDCSLSRK  600
EQGIIHMVAG LGYEWALNPI LECGVGINFR DINGWTALHW AARFGREKMV ASLIALGASA  660
GALTDPSSHD PTGRNAAYIA ATSGHKGLAG YLSELALTSH LSSLTLEESV LSKGSADVEA  720
ELTINNISKE NVNSTEDQLS LKHTLAAVRN AAQAAARIQS AFRAHSFRKR RHRGTTSLMA  780
ITDLDEYGFS ENDIQGLSAA SKLAFHNLHD HQKAALSIQK NYRGWKGRKD FLTLRQKVVK  840
IQAHVRGYQV RKKYKVICWA VGILDKVVLR WRRKGVGLRG FKPESDHVDE DEDDDDVIKV  900
FRKEKVNVAI DEAVTRVLSM VESPEAQQQY HRMLGRFQEA KAELQGLTSP EASGSEDSLL  960
NMTNDDKFVH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682739.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0K9QIH3	0.0	A0A0K9QIH3_SPIOL; Uncharacterized protein
STRING	XP_010682739.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]