PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_150880_onnf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YC
Protein Properties Length: 146aa    MW: 16749.2 Da    PI: 9.6026
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_150880_onnf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.71.6e-157951198
               NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                        +++t+  n ++P+ r+kki+k+d+d+++is+ea  l+s a elf+  l+ +s   a e+kr+ +k   +  av+r + + +fl+d  p 
  Bv6_150880_onnf.t1  7 KTSTETLNPSFPIGRVKKIVKFDKDITRISSEALFLVSGASELFLDFLAEKSLEIATEKKRKIVKLDHLRIAVKRHQpTREFLLDSLPV 95
                        445677799************************************99**************************99764789****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-17597IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-181180IPR009072Histone-fold
PfamPF008081.1E-171679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAEEEEKTST ETLNPSFPIG RVKKIVKFDK DITRISSEAL FLVSGASELF LDFLAEKSLE  60
IATEKKRKIV KLDHLRIAVK RHQPTREFLL DSLPVSLQPL DQPPVDRTVK EKSVLPRNTR  120
RIYSFFRKPL DNDDSRNQAQ VGGEND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682780.11e-101PREDICTED: putative transcription factor C16C4.22
TrEMBLA0A0K9RYT19e-60A0A0K9RYT1_SPIOL; Uncharacterized protein
STRINGXP_010682780.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.17e-42nuclear factor Y, subunit C13