PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_152990_hqjn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 624aa    MW: 69541.3 Da    PI: 6.4737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_152990_hqjn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09423469455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+ + + f  L +++P +     kK +K ++L +A++Y+k+Lq
  Bv6_152990_hqjn.t1 423 DHIIAERKRREILGQMFISLSTIIPGL-----KKTDKTTVLGEAIKYMKQLQ 469
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-14410479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.313419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12423478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7423469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-8424473No hitNo description
SMARTSM003531.3E-10425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSFSRASPDS VTQILSPAAS GHEVYELPGR HFAVEDSAFG RLKDLGNQPQ GHDPSTPIGT  60
KSPHVCSARV PADAGRANGA RFPFRRHLGI TTRPPKTFRV ALAPEDSFVP TNDEASDMGN  120
LSPLRVPSTD DGLLEELIHE GWTTTFPPDP DEAGPSEWLR LIPPPQSVQG EASSTINAEP  180
IGFVDNKCPF QAFKHTRSDE SGNGLDVERC YRSHNGKRQR LAQWEDKGGF NVGFRHGKIR  240
RKALTDVSMA RLLEVEPGPE ITSTLSKKRK AAVSMPGSAG TWIFKKKRSA GSDLRTDNMD  300
RHFTLRDMEV DPAFPTIICD PCHQNHQSET MDVLFDEQLT TTLDENFPYI NTDNSPPLDF  360
DWDFIEEFMP HIISNDNNKN NHNNDIVSLN VQEKRKLKNK EEAKKQEVNG GTKRKRQPTQ  420
VQDHIIAERK RREILGQMFI SLSTIIPGLK KTDKTTVLGE AIKYMKQLQE TVKTLEEVAE  480
KKIVESIVVV KKSKLIVSDD EGGNDNASSS TVDDNCAIDM CGSSAKDGSR YEAKNLNDLK  540
PEIETKISGQ TLLIRVYCEQ HKGILAKLIT EVENHDMRVT NCSAVPFESL GLDITIVTQI  600
EKGFTENVKE CVRRLHSSLQ LASH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413431RKRQPTQVQDHIIAERKRR
2427432ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683065.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C81e-106A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010683065.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-33bHLH family protein