PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153010_styz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 335aa    MW: 37124.2 Da    PI: 4.9453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153010_styz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-11123169455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR+ + + f  L  ++P +     kK++K ++L +A++Y+k+Lq
  Bv6_153010_styz.t1 123 DHIIAERRRRELLSQMFISLSAIVPGL-----KKVDKTSVLGEAIKYMKQLQ 169
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.043119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-14123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-10124173No hitNo description
SMARTSM003532.5E-11125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.386252328IPR002912ACT domain
CDDcd021160.00915253296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDVDLSIPTS INNSYHQYQQ SETIEVSFDE QLAATLGEDF PYPLSGESHT TSPQLDFDCD  60
VIEQFLLPQI PNNNNNHNKD NDKIHSSNVQ EDTQHCVNKE ESTRKQATGG GTKRKRQPNQ  120
VQDHIIAERR RRELLSQMFI SLSAIVPGLK KVDKTSVLGE AIKYMKQLQE KVKVLEDVAA  180
KRTVESVVVV KKSQLIVDDD KGGDDNESSS TVDDNCDGGN GSNGNGGNSN ESNNMGDSLP  240
EIEIKISGKT LLLRVYCEQQ KGVLAKLFAE VDKHDINVTN CSVIPFESLA LDITIVAQME  300
NGFNKNVRDF VRTLHSALRL ASHQGRVSSE DNHSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113131RKRQPNQVQDHIIAERRRR
2127132ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683069.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C81e-178A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010683069.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-49bHLH family protein