PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153030_uwjw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 254aa    MW: 28673.9 Da    PI: 6.6713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153030_uwjw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0975122254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + +h ++Er+RR+ + ++f  L  l+P +     kK +K ++L  A+ ++++L
  Bv6_153030_uwjw.t1  75 CHNHIIAERQRRQTLSERFIALSALIPGL-----KKIDKTSVLGAAIIHMQQL 122
                         789**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-774122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1376141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1277138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-877127No hitNo description
SMARTSM003532.6E-879128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MFLHEFVADC LVDNPPEDME AILHEINTLS SSGSDHNSSS STTTICSSVE DQGMKHGGNT  60
TVALRKRPRR LPEQCHNHII AERQRRQTLS ERFIALSALI PGLKKIDKTS VLGAAIIHMQ  120
QLKERIKILE EGNAKKQMES IVVLKQPHII LENSECNSST CNHNLSSKFS DEQLPDIEAR  180
FSNDNVLIKV HCEMQKGILI KIMSELEKLQ LLVTTTNAMP FNGRTLDITI MTQMEADFNM  240
RPQDVVQNLR SIFQ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106053.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0728e-54BH025_ARATH; Transcription factor bHLH25
STRINGXP_010683071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-56bHLH family protein