PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153040_dzcs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 265aa    MW: 30159.3 Da    PI: 8.7899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153040_dzcs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1387133555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +ErrRR+++ ++f  L +l+P +     kK++Ka+iL  A eY+k+L+
  Bv6_153040_dzcs.t1  87 HVVAERRRREKMSKGFVVLSSLIPAN----MKKMDKASILSDAAEYLKQLE 133
                         8899*********************8....69*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04682132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1686147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1786144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-1187134No hitNo description
PfamPF000106.7E-1187133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1388138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMMNSHNNDD GFDDEIFQPF KDYSIFATNK SVSEAKKSSI NSSSWSSSGK LISFENSEFE  60
AKSEVISKKE LKNRSKRVGS TCTPNEHVVA ERRRREKMSK GFVVLSSLIP ANMKKMDKAS  120
ILSDAAEYLK QLEERAKLLE QQTTKRTVES VYLVHKMQSQ QPREDKCFSK TINPDDLFDI  180
EARILSNNFL IRIHSLKKDG LIRQIVEEIR KLNLTTLNFQ TVPFGSYAVD ITIVAQASDD  240
SCMTTDDLVK NIGKVLQQHI VSQHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERRRRE
29196RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683072.20.0PREDICTED: transcription factor bHLH25-like
TrEMBLQ9ZSQ92e-52Q9ZSQ9_MESCR; Transporter homolog (Fragment)
STRINGXP_010683072.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-30bHLH family protein