PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_153660_mmxf.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43028.1 Da    PI: 6.5844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_153660_mmxf.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-221053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        + en+s rq+t+skR++gilKKA+ELS+LCd++ a+++fs+ gk
  Bv6_153660_mmxf.t2 10 KLENSSSRQTTYSKRKHGILKKAQELSILCDIDLALVMFSPGGK 53
                        679*************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.408153IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-28160IPR002100Transcription factor, MADS-box
CDDcd002665.06E-25281No hitNo description
SuperFamilySSF554556.8E-25292IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-17323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGKVKLDIKK LENSSSRQTT YSKRKHGILK KAQELSILCD IDLALVMFSP GGKPSLCCGK  60
HSIEEVIARL NQLPPQERTK RKLEGLEALK KTYRKKSDHA VNIEDFLDTS APTLKDVTEQ  120
ASKLQTRLAE IHERLWYWTN PDNVNDFGLL MQMEDSLEKS LDQIQRQKEN FQKQHCLALV  180
NEENFQKEHR LALENQFSFQ ASGGQQLQSL LWNPSDNIQQ TFLTQEQKSH TQRDIESCTG  240
STSGSYFGCL STSSKSEANS PGQLSGIDNV GHDAFQGLQF GGMYSYLPYG LNMQGGDSTN  300
MQSMLGMDQR QSTALAYDAG RNYQSTLPSH GIGNHFLPDT PADSAFADYN NYQKSTVQAP  360
AMPSIYERIA GDPSHLLFDN NPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106069.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
TrEMBLA0A0K9QDY11e-116A0A0K9QDY1_SPIOL; Uncharacterized protein
STRINGXP_010683156.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-72AGAMOUS-like 30