PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_153730_augo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 438aa MW: 48527.4 Da PI: 6.3747

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_153730_augo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	142	201	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+++c+rC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Bv6_153730_augo.t1 142 PEKIVPCARCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKSKNS 201 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	139	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-30	144	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.82	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MSGTNIMLFG KMIQLGSNLE EDVVRFVSRI EHEVVFSDDD CGSTGFDQKI LCSEQNENRG 60 YHEETTTEES METKENREPS LTSVLEVSKT PTSPCSTDTG NPETVTKQQV TSSEDLVKKN 120 RDQSDQGSSN SMSSEQNNLK KPEKIVPCAR CNSMDTKFCY FNNYNVNQPR HFCKNCQRYW 180 TAGGSMRNVP VGAGRRKSKN SAASQHRHLV FPEGSDGLIH HVMRPDGTIL AFGMDSSVPN 240 QSNASNGFFI SENSEKKSSN CSIIENNSNG KIESSQAIPC IPYGWNPIPW QSGFPVSFYS 300 TPSCNLQWLS TPSMNSDQSS SNSTSLGKHS RDENETTLKL STSDRRDQSE EKQLHNSRVV 360 IPKTLRIDDP SEAAKSSIWT TLGIKNDHHV GSFNGRVSFF GELQQAKGVN QGIDTSSLVL 420 QTNPAAFSRS LSYHEVAQ

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MSGTNIMLFG KMIQLGSNLE EDVVRFVSRI EHEVVFSDDD CGSTGFDQKI LCSEQNENRG  60
YHEETTTEES METKENREPS LTSVLEVSKT PTSPCSTDTG NPETVTKQQV TSSEDLVKKN  120
RDQSDQGSSN SMSSEQNNLK KPEKIVPCAR CNSMDTKFCY FNNYNVNQPR HFCKNCQRYW  180
TAGGSMRNVP VGAGRRKSKN SAASQHRHLV FPEGSDGLIH HVMRPDGTIL AFGMDSSVPN  240
QSNASNGFFI SENSEKKSSN CSIIENNSNG KIESSQAIPC IPYGWNPIPW QSGFPVSFYS  300
TPSCNLQWLS TPSMNSDQSS SNSTSLGKHS RDENETTLKL STSDRRDQSE EKQLHNSRVV  360
IPKTLRIDDP SEAAKSSIWT TLGIKNDHHV GSFNGRVSFF GELQQAKGVN QGIDTSSLVL  420
QTNPAAFSRS LSYHEVAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683163.1	0.0	PREDICTED: cyclic dof factor 1
TrEMBL	A0A0K9QK89	1e-149	A0A0K9QK89_SPIOL; Uncharacterized protein
STRING	XP_010683163.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-66	cycling DOF factor 1