PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_153750_phiu.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 332aa MW: 37566.3 Da PI: 6.382

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_153750_phiu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.7e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Bv6_153750_phiu.t1 21 KPRLKWTPDLHQRFVDAVNQLGGADKATPKGLMRVMGIPGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-31	19	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-16	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-22	125	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGHLQNMQTQ DMNLVLSTDA KPRLKWTPDL HQRFVDAVNQ LGGADKATPK GLMRVMGIPG 60 LTLYHLKSHL QKYRLGKDNQ QSETCSESKS DGADYKESHS MDVLNLFSEE KEINDPTQEH 120 INENIHIAQA LKVQMEVQKK LHEQIEVQRH LQLRIEAQGK YLQKVLKKAE ETLSSYNCST 180 AGVEHAKAEL SQLVSMVSSS SLSGLTDLSL DNVEQKTHMV MRNAGCSVES SLTSSESSER 240 REEEKEEEKF MFMLPLLEQS RTKGLSSRKR SNNNTIFGEK TGSKRSKQVY EEDKMGHGLI 300 KFGLLETFDL NSQCENDLDL GPRQPIDLNS KE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683165.1	0.0	PREDICTED: myb family transcription factor PHL8
Swissprot	Q9SQQ9	1e-72	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9RVJ2	1e-130	A0A0K9RVJ2_SPIOL; Uncharacterized protein
STRING	XP_010683165.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	4e-66	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]