PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_154310_ccop.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HD-ZIP

Protein Properties

Length: 299aa MW: 33400.3 Da PI: 6.3149

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_154310_ccop.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.1e-18	87	140	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Bv6_154310_ccop.t1 87 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 140 456899***********************************************9 PP
2	HD-ZIP_I/II	131.4	3.4e-42	86	178	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++dalk++n++L++++++L++e+ Bv6_154310_ccop.t1 86 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFDALKADNDTLQAQNHKLQAEI 176 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Bv6_154310_ccop.t1 177 MA 178 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-19	73	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	82	142	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	85	146	IPR001356	Homeobox domain
CDD	cd00086	6.68E-17	87	143	No hit	No description
Pfam	PF00046	2.0E-15	87	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-19	89	149	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	113	122	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	117	140	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	122	138	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-17	142	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLQTPTDNDN HPPPSLSSIL PSCTTQDFHV GTGGMAPMLG KRSMSFSGID MCEELNKNHH 60 NNHNNNNNGG DEDLSDDGSQ LGGGGEKKRR LNMEQVKTLE KNFELGNKLE PERKMQLAKA 120 LGLQPRQIAI WFQNRRARWK TKQLEKDYDI LKRQFDALKA DNDTLQAQNH KLQAEIMALK 180 NREPTESINL NKETEGSCSN RSENSSDIKL DISRTPTITE SPLLDLSAHP TTTASAATTV 240 TGKTLFPPSS MRPNGPPVAQ LLFQSPQPPS VKEETFTSMF CGIDDQTGFW PWLEQHNFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681986.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Refseq	XP_010683229.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Refseq	XP_010683230.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-106	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0K9QE25	1e-166	A0A0K9QE25_SPIOL; Uncharacterized protein
STRING	XP_010681985.1	0.0	(Beta vulgaris)
STRING	XP_010683229.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	6e-86	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]