PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_155050_yefe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 266aa    MW: 29124.2 Da    PI: 5.4872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_155050_yefe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10148195455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Bv6_155050_yefe.t1 148 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 195
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.77E-10142199No hitNo description
SuperFamilySSF474591.11E-17142211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-18144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8148195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPQTTLMNE TVSYNLSEIW PISMNGGASE LAGAGLGLRR SPFGPNLARF VEARPNLEVS  60
EDDGGVARKR RENVVEDDST KGVCTGNGMS DSDGKRLKSA GSGDDNQNQK AGGETNSGKE  120
AEQNNKPASE PPKDYIHVRA RRGQATDSHS LAERARREKI SERMRILQDL VPGCNKVIGK  180
ALVLDEIINY IQSLQRQVEF LSMKLEAVNT RVSPGIEGFP SKDFGQQEYD TSGMGYGSQT  240
PRDQYGRSSS PEWLHMQIGG GFDRQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683313.10.0PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ84T081e-78BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0K9RFZ01e-156A0A0K9RFZ0_SPIOL; Uncharacterized protein
STRINGXP_010683313.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-85BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]