PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_155470_dihy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 337aa    MW: 38570 Da    PI: 4.6406
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_155470_dihy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-092803142155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yp+++++  LA+ +gL++rq+ +WF N+R ++
  Bv6_155470_dihy.t1 280 KWPYPTEADKIALAEMTGLDQRQINNWFINQRKRH 314
                         569*****************************885 PP
2ELK29.91.3e-10234255122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         +LK+qLlr ++++++sLk EFs
  Bv6_155470_dihy.t1 234 DLKDQLLRRFGSHISSLKLEFS 255
                         6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2276120IPR005540KNOX1
PfamPF037906.3E-2378119IPR005540KNOX1
SMARTSM012563.7E-23128179IPR005541KNOX2
PfamPF037911.6E-23132178IPR005541KNOX2
SMARTSM011881.5E-5234255IPR005539ELK domain
PROSITE profilePS512139.673234254IPR005539ELK domain
PfamPF037892.7E-8234255IPR005539ELK domain
PROSITE profilePS5007112.73254317IPR001356Homeobox domain
SuperFamilySSF466899.84E-20255328IPR009057Homeodomain-like
SMARTSM003893.8E-13256321IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-28259319IPR009057Homeodomain-like
CDDcd000866.52E-13263318No hitNo description
PfamPF059209.0E-18274313IPR008422Homeobox KN domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMDELYGLHP TSGDYSDKAL MSPDNLILPS DYHSLIMNSG NTAAVRFGSD ELISATCISE  60
SASITPDMPP DDNTSTSIKA KIASHPHYPR LLQAYIDCHK VGAPPEIANI LEEIKQENDM  120
YRRDFGSLRT CLGTDPELDE FMETYCEILD KYKSDLSRPF DEATNFLNKI ETQLRNLCKG  180
AFVKTASAGD SETRRDSSQE QGSLEDEGVV SSDEDYSGGE IDVQDLQPKD EERDLKDQLL  240
RRFGSHISSL KLEFSKKKKK GKLPREARQM LFEWWNAHYK WPYPTEADKI ALAEMTGLDQ  300
RQINNWFINQ RKRHWKPSEN MQYALMENFS GQYFTDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3740241e-168DQ374024.1 Beta vulgaris chromosome 9 clone BAC62 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695813.10.0PREDICTED: homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS61e-138KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0J8BBK50.0A0A0J8BBK5_BETVU; Uncharacterized protein
STRINGXP_010695813.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-133KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]