PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_155740_wuuo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 402aa MW: 44169.2 Da PI: 6.7874

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_155740_wuuo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	231	286	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rFv+a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Bv6_155740_wuuo.t1 231 KSRRCWSPELHRRFVHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 286 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-29	228	289	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.267	228	288	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-17	229	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-26	231	286	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	233	284	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MMDFRDNMEK CQEYINGLEE EKRKIQVFQR ELPLCLDLVT QAIEACKQQL CGSGTNTTTE 60 CLNGHSECSE QTTSDGPVLE EFIPLKRSNS PDDDDYELES DKSQINSDLN NNHENSGKKS 120 DWLRSVQLWN QTPDPPTTQE DHQPKKVTVV EVKRNGNGAF HPFQKENNCN GNEKHNNNNN 180 NNDNNNKQDA STPAASACSS AQEVDMGPSS GGSGGGSASK KEEKGGQSQR KSRRCWSPEL 240 HRRFVHALQQ LGGSHVATPK QIRDLMKVDG LTNDEVKSHL QKYRLHTRRP SSGVHNNANQ 300 QQAPQFVVVG GIWMPPQEYA AVTATTTSGD KTNVSPPNGI YAPIATVAAP SLMHQTSTHR 360 IQPKQQSSQS HCEERASHSE GGARSNSPAT SSSTHTAASH AH

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MMDFRDNMEK CQEYINGLEE EKRKIQVFQR ELPLCLDLVT QAIEACKQQL CGSGTNTTTE  60
CLNGHSECSE QTTSDGPVLE EFIPLKRSNS PDDDDYELES DKSQINSDLN NNHENSGKKS  120
DWLRSVQLWN QTPDPPTTQE DHQPKKVTVV EVKRNGNGAF HPFQKENNCN GNEKHNNNNN  180
NNDNNNKQDA STPAASACSS AQEVDMGPSS GGSGGGSASK KEEKGGQSQR KSRRCWSPEL  240
HRRFVHALQQ LGGSHVATPK QIRDLMKVDG LTNDEVKSHL QKYRLHTRRP SSGVHNNANQ  300
QQAPQFVVVG GIWMPPQEYA AVTATTTSGD KTNVSPPNGI YAPIATVAAP SLMHQTSTHR  360
IQPKQQSSQS HCEERASHSE GGARSNSPAT SSSTHTAASH AH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-14	231	284	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-14	231	284	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-14	231	284	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-14	231	284	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-14	231	284	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695844.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-103	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A0J8B7X9	0.0	A0A0J8B7X9_BETVU; Uncharacterized protein
STRING	XP_010695844.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-97	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]