PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_156070_styp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 1323aa    MW: 147804 Da    PI: 8.5269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_156070_styp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003912311254223
                          EET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                          kC+  dCgk F+++ + + H+r+H
  Bv6_156070_styp.t1 1231 KCHqkDCGKKFRSHKYVVLHQRVH 1254
                          6*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-141555IPR003349JmjN domain
PROSITE profilePS5118313.731657IPR003349JmjN domain
PfamPF023752.0E-141750IPR003349JmjN domain
SMARTSM005584.5E-47285454IPR003347JmjC domain
PROSITE profilePS5118433.514285454IPR003347JmjC domain
SuperFamilySSF511977.14E-27286453No hitNo description
PfamPF023732.1E-36318437IPR003347JmjC domain
SMARTSM003551512071229IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012091233IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.0912301259IPR007087Zinc finger, C2H2
SMARTSM003550.2612301254IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.0E-612311263No hitNo description
Gene3DG3DSA:3.30.160.604.6E-512311260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012321254IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.46812601289IPR007087Zinc finger, C2H2
SMARTSM003550.01412601284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.7E-912611284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012621284IPR007087Zinc finger, C2H2
SuperFamilySSF576672.86E-912701313No hitNo description
Gene3DG3DSA:3.30.160.606.3E-912851313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.11812901323IPR007087Zinc finger, C2H2
SMARTSM003550.5512901316IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012921316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1323 aa     Download sequence    Send to blast
MDNVEIPQWL KLLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PLPKPSKRYV  60
FNNLNKSLVK SREFGSDVHF AESSDSSKRS SQDKMNESDN RAVFTTRQQE LGQDSKRSKE  120
PGAQKQVWQS GELYTLEQFE SKSKAFSRSV LGMIKVVTPL VIEALFWKAA LEKPIYVEYA  180
NDVPGSGFAE PEGSLGYANA HKRRRRVCSQ SYRGRSYGRQ LVVNTASNLC TGVEVQELGP  240
SLSPVAEIGK ECIDRPTSPP NETSQSTKPS GLCANSEPEG TAGWKLSNCP WNLQVIARSA  300
GSLTRFMLDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSL NFMHTGSPKT WYAVPGEYAF  360
AFEDVIRKQA YGENVGHLAA LKRLGEKTTL LSPEIVVASG IPCCRLVQNP GEFVVTFPRA  420
YHVGFSHGFN CGEAANFGTP LWLSIAKEAA VRRAAMDHLP MLSHQQLLYL LTMSFISRVP  480
RTLLPGVRSS RLKNRLKEER ELLVKKAFIE DMVKENLLLN TLLGKDSAFR AVLWHPDSLP  540
SFARDSLSQA GTTLVGILNK DAGLSVLPPK GANHDVHHRT SYRTPDDLYM DSSDLLGDFQ  600
VDSGTLVCVA CGILGYPIMS VVQPSKGTSV DSFAAGVVHI PQQAKSSHMQ YKTKISLSET  660
NNDGTWDTSG FLRPRIFCLE HAVQIVELLK PKGGAKMLVI CHSDYQKIKA NAVAVAEELR  720
ATFNYKEVQL DSASQEELNL IDVAIDDEQL TDFKEDWTSK LGINLRFSIK ARKSCLPKKI  780
EHVLNIDYIL SVMAPVSRIS NIKWCSRRSR SKRESHNRTL AKYCDGNISK KDQTIYESNS  840
VEMKGKVLLQ YSRRKYRAKS RNFTGVEFAS GCSLACLTEV TDADCGKNAN GVESETLRSF  900
CIKNAGEDSK DFDTSKKHLV VYDEVEIPEA NMERASNRTS EVLAITEAST SSDSCFLGIV  960
GECEGSNKEN EELPATAMPD AGTSSTAGKD MRGENGCEAK VSKLSTMCRP KELNQEHAVG  1020
NVRVSSITDC AFDTSHTPVI NGSSVPDSAR VKVHTHGTFD RRENLGESET YKHDNFSTFF  1080
ESTTTMEVDM PVLPNCSLTD SSQTGVLVTS LSNTWEGKDR TVAKAEITCG DRTKRKREGE  1140
LQPKTESSFM KSPCEGLRPR KCKEDPLPAR RSNVREIAEA KSPIKKRKKH LSSSVSCNEV  1200
LDNETTYRCN LEGCRMHFRT RVELSLHKRN KCHQKDCGKK FRSHKYVVLH QRVHDDERPL  1260
KCTWTGCTMT FKWAWARTEH LRLHTGERPY HCKIKGCGLT FRFVSDFSRH RRKTGHYVHP  1320
PSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-53283468157346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-53283468157346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206KRRRRV
2806813RRSRSKRE
3807812RSRSKR
411841188KKRKK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695898.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0J8BBE00.0A0A0J8BBE0_BETVU; Uncharacterized protein
STRINGXP_010695898.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]