PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160250_ctdh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 310aa    MW: 33996.4 Da    PI: 8.2844
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160250_ctdh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39e-18233266134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Bv7_160250_ctdh.t1 233 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 266
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-751308IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.596227263IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-15227277IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14231264IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-15231290No hitNo description
CDDcd002028.73E-14232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003202.1E-15233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSGTKLMEEI DCGNFFDQID DLLEFPNDDV EKGLIDNGVG VEHQYNDFPP VFWSENSPVF  60
SAANSNSASD LSAELSVPYE DIVQLEWLST FVEDSFAGGG LTLEKSQCTS SSKDSPRNQF  120
QTSSPISVLE SSSACSRGKT LPASHEKRAR SKRPRPATFN PRAHLISPAS SILQTPHRLL  180
AFNAPMSGSG SFAESLPLKK KKKIKILPPS GGISQNQNEN PNANTTSQAL RKCMHCEITK  240
TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV PSLHSNSHKK VVEMRTKITE  300
EKPLVTTAYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683872.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A0K9QV981e-143A0A0K9QV98_SPIOL; GATA transcription factor
STRINGXP_010683872.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-43GATA transcription factor 9