PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_160720_jzkt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 28103.8 Da PI: 7.5425

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_160720_jzkt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	8.7e-21	83	137	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++t++qle Le+ F+++r+++ +++ +LA++lgL+ rqV vWFqNrRa++k Bv7_160720_jzkt.t1 83 KMKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWK 137 567799************************************************9 PP
2	HD-ZIP_I/II	114.3	7.5e-37	84	174	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl+++q+++LE+sF+ee+kL+p+rK++lareLglqprqvavWFqnrRAR+k+k+lE y+aLk +++++++e+++L++ev +L++ l+ Bv7_160720_jzkt.t1 84 MKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWKAKKLEYLYDALKLEFENVSKEKQKLQDEVLKLKSMLM 174 59*************************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-21	58	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.56	79	139	IPR001356	Homeobox domain
SMART	SM00389	2.1E-18	81	143	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-18	83	137	IPR001356	Homeobox domain
CDD	cd00086	2.20E-17	83	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-22	86	144	IPR009057	Homeodomain-like
PRINTS	PR00031	6.6E-6	110	119	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.6E-6	119	135	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-6	144	173	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDWNNNSDIL KNSSSAFVSC TPEISSASNL LYNINQLDSF PGLEVIKHQC SVDEMMGSNI 60 VATPSMGMGR DMIMMSFGNN QEKMKRRLTT NQLESLESSF QEERKLDPDR KMKLARELGL 120 QPRQVAVWFQ NRRARWKAKK LEYLYDALKL EFENVSKEKQ KLQDEVLKLK SMLMQQATKK 180 QVYNYTEASC EETVESTSVA IPNSDHHKNA SQAVFSRGHN NKEGHHLFNV DDYNAVSPCY 240 WGAFA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683925.2	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A2P6RBE0	8e-74	A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_010683925.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	5e-38	homeobox 51