PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_160720_jzkt.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 21055.9 Da PI: 9.5458

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_160720_jzkt.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5e-21	18	72	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++t++qle Le+ F+++r+++ +++ +LA++lgL+ rqV vWFqNrRa++k Bv7_160720_jzkt.t2 18 KMKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWK 72 567899************************************************9 PP
2	HD-ZIP_I/II	115.3	3.6e-37	19	109	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl+++q+++LE+sF+ee+kL+p+rK++lareLglqprqvavWFqnrRAR+k+k+lE y+aLk +++++++e+++L++ev +L++ l+ Bv7_160720_jzkt.t2 19 MKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWKAKKLEYLYDALKLEFENVSKEKQKLQDEVLKLKSMLM 109 59*************************************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-20	8	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.56	14	74	IPR001356	Homeobox domain
SMART	SM00389	2.1E-18	16	78	IPR001356	Homeobox domain
CDD	cd00086	3.46E-16	18	75	No hit	No description
Pfam	PF00046	2.4E-18	18	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-22	21	80	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-6	45	54	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-6	54	70	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.6E-7	79	108	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MGMGRDMIMM SFGNNQEKMK RRLTTNQLES LESSFQEERK LDPDRKMKLA RELGLQPRQV 60 AVWFQNRRAR WKAKKLEYLY DALKLEFENV SKEKQKLQDE VLKLKSMLMQ QATKKQVYNY 120 TEASCEETVE STSVAIPNSD HHKNASQAVF SRGHNNKEGH HLFNVDDYNA VSPCYWGAFA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683925.2	1e-133	PREDICTED: homeobox-leucine zipper protein ATHB-22
Swissprot	Q9LZR0	1e-42	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2P6RBE0	7e-68	A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_010683925.1	1e-134	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-36	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]