PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_161770_eqms.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 695aa    MW: 76649.3 Da    PI: 6.7302
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_161770_eqms.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23120221199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF  
  Bv7_161770_eqms.t1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL- 207
                         89****************************997656666..69999********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Bv7_161770_eqms.t1 208 -RAENGDLCVGIRRA 221
                         .4488999****997 PP
2Auxin_resp113.42.2e-37287370183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Pra+t+eFvvk+ +v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dpv+Wp+S+Wr+L+
  Bv7_161770_eqms.t1 287 AATHAAKGQPFEVVYYPRAGTPEFVVKAGHVRAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPVHWPDSPWRLLQ 370
                         688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.98E-29111223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-36114223IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-21119220No hitNo description
PROSITE profilePS5086313.042120222IPR003340B3 DNA binding domain
SMARTSM010192.4E-21120222IPR003340B3 DNA binding domain
PfamPF023621.8E-21120221IPR003340B3 DNA binding domain
PfamPF065074.7E-32287370IPR010525Auxin response factor
PROSITE profilePS5174518.962609692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITFMDPKEK IKEGDNCLDS QLWHACAGGM VQMPPVNTKV FYFLQGHIEH ANGNVDFRSF  60
PRIPAYVQCR VEDIRYLADQ ETDEVYAKIR LIPVANELDY SDEDIGVHGT EVQENKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP  180
RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST  240
VLNYGAFSAF LREDENRITR NGNGVGLNSG GNPSAKGKVK IESLIEAATH AAKGQPFEVV  300
YYPRAGTPEF VVKAGHVRAA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVSDPVH  360
WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP  420
MDGQLPVPTF PGNFLGPNSP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG  480
FPALDPTTTL PNRPSSSLSY QKPGNNENIS CLLTMGNSNQ STKKSDVTKP HHFVLFGKPI  540
LTEQQMSLSR SGETVSPVPT GNSSSEGNVD KGGNVSDGSG SALNQDRSSS ERHPWLKDNR  600
PEMDLELETG HCKVFMESED VGRTLELTLL NSYEELCSRL ANMFGIESSD MLNRVVYRDS  660
AGSSKQIGDE PFSEFAKRAK RLTILMDSSS DNIGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-811839151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684071.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9R0A20.0A0A0K9R0A2_SPIOL; Auxin response factor
STRINGXP_010684071.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]