PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_162100_nmor.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 195aa MW: 21083.6 Da PI: 7.6326

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_162100_nmor.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.7	1.2e-35	47	191	4	113
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg.... 88 + ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a + +++ ++sss + Bv7_162100_nmor.t1 47 RSNASKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTDGQTIEWLLRHAEPSIIAATGTGTVPAvaE-FSSPAKSSSI-----Pakal 131 556789********************************************************88888321.1222222222.....13333 PP TCP 89 ...................................kaaksaakskksqksaasalnlake 113 ++++ +++ ++q+++a +l +ake Bv7_162100_nmor.t1 132 plsvdsgcyfpspavlefgyrhipsftalllqpddGQQQQLQQEDEQQQQEAGVLGFAKE 191 466777778888888899998888888888888854444444667777777777888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-30	50	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.381	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGSESTTTTT IFHNNNLPSS DPTFSLLSTT TATSSAAKST KLAVTRRSNA SKDRHTKVNG 60 RGRRVRMPAL CAARIFQLTR ELGHRTDGQT IEWLLRHAEP SIIAATGTGT VPAVAEFSSP 120 AKSSSIPAKA LPLSVDSGCY FPSPAVLEFG YRHIPSFTAL LLQPDDGQQQ QLQQEDEQQQ 180 QEAGVLGFAK EEIEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010684094.1	1e-143	PREDICTED: transcription factor PCF1
TrEMBL	A0A0K9QRN6	1e-73	A0A0K9QRN6_SPIOL; Uncharacterized protein
STRING	XP_010684094.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-28	TCP family protein