PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_162330_mjoz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 524aa    MW: 57036.1 Da    PI: 9.8766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_162330_mjoz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0581103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Bv7_162330_mjoz.t1  81 FICEICNKGFQRDQNLQLHRRGH 103
                         89*******************88 PP
2zf-C2H213.90.00016157179123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Bv7_162330_mjoz.t1 157 WKCEKCSKKYAVQSDWKAHTKTC 179
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.08E-780103No hitNo description
Gene3DG3DSA:3.30.160.601.4E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.3E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84581103IPR007087Zinc finger, C2H2
SMARTSM003550.02281103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.08E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MNLQGIGDGF SLPSTIRGFP QNHLQQLQQQ PPPSNPNPKV LSHNNGNPLP SKKKRNLPGT  60
PDPDAEVIAL SPKTLMATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVKKK  120
VYICPEKTCV HHDSSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKTCG  180
TREYKCDCGT LFSRKDSFIT HRAFCDALAE ENVRINSVAP PSLSFKTDDQ SNNKSTIVPQ  240
PGFHHGFVSQ GLQENSNSIS QFNPLFRQDF SNMAGTNTLN TGLPEMVQMA TSNNLFGSSS  300
IPNFMINNQY SSLERSATAT PTSTTASLSL SSFPLALKDE GRNNNNNKTN MVENLASLYS  360
HDQNNPSSSS PNPTTPMSAT ALLQKAAQMG STRSNPSFLG TSMGVMTSSP PTNILSSALV  420
SSTEAPDCVG NGPNSCATTS TGLVGSSNLM STSVNNLSQL IMQSGSKSQN NLNQLKLSSI  480
SNALTRDFLG MGAEDGSVRP FLPQELASFA SMNSTMGLNH FGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36153219369Zinc finger protein JACKDAW
5b3h_F1e-36153219369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684114.10.0PREDICTED: zinc finger protein JACKDAW
SwissprotQ700D21e-136IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLF6HR110.0F6HR11_VITVI; Uncharacterized protein
STRINGXP_010684114.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Hirano Y, et al.
    Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
    Nat Plants, 2017. 3: p. 17010
    [PMID:28211915]
  3. Kobayashi A,Miura S,Kozaki A
    INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
    Plant Mol. Biol., 2017. 94(1-2): p. 1-13
    [PMID:28324206]
  4. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]
  5. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]