PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_163050_reum.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 660aa    MW: 74102.6 Da    PI: 6.318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_163050_reum.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14479525455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Bv7_163050_reum.t1 479 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 525
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-532180IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19477540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-15479529No hitNo description
PfamPF000101.1E-11479524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18479540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-18481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MLQSAVQAVQ WTYSLFWHYC PQQGILVWLD GYYNGAIKTR KTVQPMDTSA EEACLQRSQQ  60
LRELYESLSA GELNQPARRP CAALSPEDLT ESEWFYLMCV SFSFPPGVGL PGTTFVKGQH  120
TWLMGANEVD SRVFSRAILA KSAQIQTVVC IPVMDGVVEL GYTERIQEDL SLIQRVKSFF  180
SDCYHHHQLH RELQLQSKPA LSEHSTSNPT VSSNHSHFQS PLTPYAYATT ILTHTPNGGS  240
IDNDDEEETG VEANSDSGDQ MNLGLPIRLE SGSQKGRTII PCSSDEPSEL MQMEMSENIR  300
LDSSDDVSNN LDLDFPSMDV GPPSSRQHNT HDSFMTTKLA RRWPVMQQQQ QQLQDPLIID  360
NVLQPSLTDM TPMEEVSQEN RHYSQTVSII LKLQSSTSAA SSSHLSYSPN SAFLSWKSRT  420
HLYHSPVEGT SQWLLKYILF TVPFLHSKYR DKNVSSPNTT LQARGKASGG ASHDELSANH  480
VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLRKKLQE LEGHTNSVQE  540
RDKRKVRVVE EGGNSSEIRA KVSGPTTTLL SQQGNMLEVS IIESDALVEM QCPYKEGLLL  600
DVMMILRDMR VQVTTVQSSL HNGILVAELR AKVKENVNGK KPSIIEVKRA VNQVIPQSDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-21218113193Transcription factor MYC3
4rqw_B5e-21218113193Transcription factor MYC3
4rs9_A5e-21218113193Transcription factor MYC3
4yz6_A5e-21218113193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483488ERRRRE
2484489RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684257.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGXP_010684257.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-90bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]