PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_164040_xodf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YB
Protein Properties Length: 172aa    MW: 19677.6 Da    PI: 6.5061
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_164040_xodf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.81e-5563158297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdr+lPianv+rimk++lP+nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy++plk yl++yre
  Bv7_164040_xodf.t1  63 KEQDRLLPIANVGRIMKQILPSNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSSLGFDDYADPLKRYLHRYRE 153
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +ege+
  Bv7_164040_xodf.t1 154 FEGER 158
                         **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.9E-5357168IPR009072Histone-fold
SuperFamilySSF471135.97E-4065166IPR009072Histone-fold
PfamPF008085.0E-2868132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-1996114No hitNo description
PROSITE patternPS00685099115IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-19115133No hitNo description
PRINTSPR006152.5E-19134152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVDNITSYSN SGRLLANHNP NATSSSQQHH ENYCHKIHHQ SSNIEHEDYA NHELEDQASA  60
AIKEQDRLLP IANVGRIMKQ ILPSNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR  120
KTVNGDDICW ALSSLGFDDY ADPLKRYLHR YREFEGERVA NHNKERENNS HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4662153192Transcription factor HapC (Eurofung)
4g92_B9e-4662153192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684402.11e-127PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822483e-63NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0K9QRK15e-84A0A0K9QRK1_SPIOL; Uncharacterized protein
STRINGXP_010684402.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-65nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]