PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_164470_cqmf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 462aa    MW: 48703.7 Da    PI: 7.4123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_164470_cqmf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-104367226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        + + C +++rtG+C +G rC+++H+
  Bv7_164470_cqmf.t1 43 GVSDCVYYMRTGFCGFGTRCRYNHP 67
                        6789********************8 PP
2zf-CCCH39.59.5e-1388114127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f++tGtCk+G +CkF+H++
  Bv7_164470_cqmf.t1  88 PGEPVCQYFLKTGTCKFGTTCKFNHPR 114
                         5789*********************96 PP
3zf-CCCH36.77.2e-12135160227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  Bv7_164470_cqmf.t1 135 GEKECSYYLKTGQCKFGITCKFHHPQ 160
                         7899********************97 PP
4zf-CCCH35.41.8e-11290316127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+G++C+++H+p
  Bv7_164470_cqmf.t1 290 PGEPECQYFLKTGNCKFGGSCRYHHPP 316
                         5799*********************97 PP
5zf-CCCH382.8e-12336361126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++t +C f+++ G+Ck+G++CkF H+
  Bv7_164470_cqmf.t1 336 PGTQPCTFYMQHGYCKFGPTCKFDHP 361
                         689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.6E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2254169IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-74367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-64470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-44767IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.87387115IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-1089114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-592114IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821133161IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4139159IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108289317IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826335363IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7335363IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10336361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5338360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MELYGRNQGS EVDPPAEWGE TGLEESMWRL GLSGRETYPE RPGVSDCVYY MRTGFCGFGT  60
RCRYNHPHDR AAAVAAARLV GGEYPERPGE PVCQYFLKTG TCKFGTTCKF NHPRNAGGSL  120
TNAPLNIQGF PLRPGEKECS YYLKTGQCKF GITCKFHHPQ PAGMSMPAAA PPFYPTVQSP  180
SVPIPETAAG SSPNYRVARP PLVPGSYVPG SYGPVLLSPG VVPLPGWGSY SGPLSPVLSP  240
GGQPTAGGSV YGVSSLSPST PGLAGSYPSL LSSDGQSITG TTEHKFPERP GEPECQYFLK  300
TGNCKFGGSC RYHHPPDGGA SAAACFLGPL GLPLRPGTQP CTFYMQHGYC KFGPTCKFDH  360
PVGMMKYSPS ASSLTETPVA PYLAGSSIVT LPHSSSSTEL LSEYALGSPG DTQSNRTPSS  420
GSTSVGLTVI QTTTNVQRSG QGPVLLSSSI SMVEDDEANH SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451567e-51AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684493.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-166C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9RJK70.0A0A0K9RJK7_SPIOL; Uncharacterized protein
STRINGXP_010684493.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-124C3H family protein