PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_165180_jxmy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 137aa    MW: 14857.2 Da    PI: 10.0956
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_165180_jxmy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-182458135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+tt+TplWR gp g+ktLCnaCG++y kk++
  Bv7_165180_jxmy.t1 24 CTDCQTTTTPLWRGGPAGPKTLCNACGIKYHKKRR 58
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-141658No hitNo description
PROSITE profilePS5011413.2441853IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-141877IPR000679Zinc finger, GATA-type
CDDcd002026.51E-142369No hitNo description
Gene3DG3DSA:3.30.50.108.9E-162358IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-162458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MMLDLKEECS VSESQSSSNE LKRCTDCQTT TTPLWRGGPA GPKTLCNACG IKYHKKRRAL  60
LGLDKGKVDK HNNKKKMMNN KSSSSGSSSN GSLGIPLKIK VMASGIRQTS ENLRDKLGEV  120
EQAAMLLMAL SYGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684626.11e-96PREDICTED: GATA transcription factor 16 isoform X2
SwissprotQ9FJ103e-31GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0K9QQS05e-45A0A0K9QQS0_SPIOL; Uncharacterized protein
TrEMBLA0A0K9QSF57e-45A0A0K9QSF5_SPIOL; Uncharacterized protein
STRINGXP_010684625.14e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-29GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]