PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_166940_kzqe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 250aa    MW: 28295.3 Da    PI: 4.731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_166940_kzqe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.83.1e-1287187288
                FAR1   2 fYneYAkevGFsvrk....skskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                         ++ +Y+k+ GF vr+    s+++k+++ + + ++t++C +eg+++++++          +    ++r++++++C  ++  + +++g we+ 
  Bv7_166940_kzqe.t1  87 CFVKYGKQEGFGVRRvgggSSMQKKEKVKVMRNYTWRCECEGEPDRKRTVdgkrltvgkKGVDVSSRKTKKCNCPVMIYASVNEEGLWEIR 177
                         699***********94443455555777788899*********9998877888988876666777************************** PP

                FAR1  80 kleleH.nHe 88 
                         k  l+H nH+
  Bv7_166940_kzqe.t1 178 KAILQHeNHN 187
                         ****997775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1087187IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGEDIEFSTP NHEQQRRSRR VDFDLNEEVP DIFLEEESGQ LVELCNEDNI VEECVSGSFT  60
SNNTSNNKVD VPNVGMVFGT WDEIDECFVK YGKQEGFGVR RVGGGSSMQK KEKVKVMRNY  120
TWRCECEGEP DRKRTVDGKR LTVGKKGVDV SSRKTKKCNC PVMIYASVNE EGLWEIRKAI  180
LQHENHNPTP SKVRNISKFR QEEVSCAVRR KLFNDKAAGV DDDEEACNSE SDDDEGHELG  240
GQVNIWSGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681467.11e-158PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_010681467.11e-158(Beta vulgaris)