PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_167440_jfxh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 563aa    MW: 62314.8 Da    PI: 5.9716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_167440_jfxh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16325371455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Bv7_167440_jfxh.t1 325 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 371
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-21318388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-17324375No hitNo description
Gene3DG3DSA:4.10.280.101.0E-21325379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13325371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNYYVPDFEM EDEHHIISTS SPITRHKAED EILELLWQDG QIVAQPQNQR KFQPSSAAAS  60
PPPLPNYQYQ HHHHHQHHQH QQQQQQQQQQ QLYMAEDEMA TWLHYPLDDL YSDILCENQN  120
QTSTQLPAVA TTVVRQPQEI RPPVAPVRPP VPPPPSTTTT TTTTAGSTMN FPLFSRMRGN  180
RELERLPSLR TDLTVVESNS TPALGQVQSM GEVSSAFPSS VGGERLDKDR GSGGKRLEKA  240
AGGSDEITVS SSSSGGPTNT TTTAIIASED VGEKVVMEDR KRKQRDVDES PTTATAQDVE  300
LEAGDDEKKH SRGSHFGKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKSDKASML  360
DEAIEYLKSL QMQVQMMSMG CGMVPMMYPG VPPQYMPPVG MGMGMGMGMG MDMGMNRPMM  420
SFPPNMPGSN LPTAQSVAAG SQIAPRFTIP PVRMPSLPGS NFSANQASNQ VDPVHSSFPV  480
QNPALPQQPV QNPALPQQPN LNDPYQYMAF QQMQMQMQMQ MQMQMQAVQN QSISQPGSSK  540
PSTSKSEAQP GPSTSRSEAE DDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329334ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684995.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A0K9QKT21e-138A0A0K9QKT2_SPIOL; Uncharacterized protein
STRINGXP_010684995.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-48phytochrome interacting factor 3-like 5