PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_168260_jzca.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 583aa    MW: 63601.4 Da    PI: 7.0214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_168260_jzca.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-09396443455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Bv7_168260_jzca.t1 396 SHSLAERVRREKISERMKLLQDLVPGC----DKVTGKALMLDEIINYVQSLQ 443
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17390461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-10390447No hitNo description
PROSITE profilePS5088815.682392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16392461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6396443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10398448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEKDFFLNAG IPPSLRYDHP FSSSSSSSMP TWQTLSSAME IQTNQSHDCF LSTQPPPPPT  60
NHNDNFESAL SSMVSSPAAS NSALSNDNFM IRELIGKLGN ICNSGDISSS GQHHVPPPYI  120
GANGGNCSTN NSTYSTPLSS PPKMGISMPI MDHLVKENFP TLGNSIPLSS NLPAMPGDPG  180
FAERAARFSS FGSRSFNGRI SQFGVNNNGS NTNTNTTTSF NNNNNNVELC YRSNTNTSNL  240
SGSGKLQRVS SSPSLIKATG SDEAENNKNS LLFQNNERKQ SGNCNQEQGE FSNSRDNSSI  300
SGQNQVVEIG SNRKRKAAPP KGKSKEIQSQ SPLPKVVENG EDLSAKRSKS EESDDTKTEE  360
NRRDDGKKQS NANQKPPEAP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  420
GCDKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLSSVNPRL EFNMGNLFSK DVIQPNCSLP  480
HPMYPPDSLA PTHYGQTHQN PLQDSITTTA PSPMAPLNST TNQNHALHLP PLDFFSNGLS  540
QLSSLCEGDL QSIVQMGFGQ KEDGFQSQVL HGSNLSPLMK IEF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685111.10.0PREDICTED: transcription factor bHLH78
TrEMBLA0A0J8C0850.0A0A0J8C085_BETVU; Uncharacterized protein
STRINGXP_010685111.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-67bHLH family protein