PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_169290_jndd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 390aa    MW: 42899.3 Da    PI: 4.4448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_169290_jndd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-20117167256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++ge
  Bv7_169290_jndd.t1 117 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRGE 167
                         69*******.**********954...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.06E-33117175No hitNo description
SMARTSM003801.2E-38117180IPR001471AP2/ERF domain
PROSITE profilePS5103224.039117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32117176IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22117175IPR016177DNA-binding domain
PRINTSPR003671.2E-11118129IPR001471AP2/ERF domain
PfamPF008472.5E-12118167IPR001471AP2/ERF domain
PRINTSPR003671.2E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MCGGAVISDF IPTGRSHKLT ADYLWPDLNG AGAKKVNSGY SKPLRSGIIN VDDDDDDEAF  60
EADFLEFKDE SDEDISVTED FKPFSFGVFK SKLSSGLKPV EFNSPAEKSA KRKRKNQYRG  120
IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDAE ARKIRGEKAK VNFPEEAAPV  180
SAAAPRRTVK ARSQKTVAKK NSTAPPQNIN QNFNLMNNVE NEFYSSFALV EEKPQVKQFE  240
CSEPMPAVGG EVGFKPFNDA TTGLYFTSEE GSNSFDCSDF GWGENVPKTP EISSFFATAL  300
DGGDVLDDGF ATKKLKSTSG DAVPADNSGK SLSEELSDAD FDSQLNFLDM PYLDENWAIN  360
AFLGNDASNE DSSMNLWSFD DLPALSGTVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211161761374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685231.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2
RefseqXP_010685232.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2
RefseqXP_010685233.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2
TrEMBLB6UZ630.0B6UZ63_9CARY; Dehydration-responsive element binding protein
STRINGXP_010685231.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.37e-61related to AP2 2