PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_169630_gsed.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 500aa MW: 57741.9 Da PI: 8.3549

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_169630_gsed.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	472	493	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + +Crf+ r G C yGdrC+F H Bv7_169630_gsed.t1 472 QQPCRFYPR-GKCYYGDRCRFLH 493 579****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	1.59E-7	96	142	No hit	No description
Gene3D	G3DSA:1.10.720.30	2.0E-9	96	142	IPR003034	SAP domain
PROSITE profile	PS50800	9.926	107	141	IPR003034	SAP domain
SMART	SM00513	0.0032	107	141	IPR003034	SAP domain
Pfam	PF02037	5.5E-9	108	141	IPR003034	SAP domain
SMART	SM00356	81	326	348	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-6	466	495	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	469	494	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	469	495	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.863	469	496	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MAKSYGNTIN LVEDDEQDYS EMEDSEFEDV NSDDSEEDPT YMDDLNEAKS KLSNLSIKTR 60 FISSGKIDDD DDDDEVSIIE EMSAPKLGIK DIKDFEEIQR IIDCGQVEKL KVEQCKIYLR 120 KNGLRLTGKK DTLIQRIKEH LEILNGGGER KFPQSSFVLN CKGDACMGDV VMFEQTVYEG 180 YSIASRSAIG PPCGKRLVVG RIVKESYGAA KQQHTFTVEV LWSKGYKSLP PLHPLLIKGR 240 NLYKLNTLRQ RWEDESERPR VLSEKHSRGS IARSNRESRI QEKTSKKTLK SSSRVCPKGQ 300 SSHQQKNHKC TIDHVSQQNK ENIAAASRVC LANKDKFCGF SDKFLHPRQP RNFESKENYV 360 RPVLIPQMFQ QNPASYHNNS IVPPIREHNR TAESMGSHYG FSDRFIHPRQ PRHFEYEENH 420 VRPVLIPQMF QQKPVLYHSE NGNLPTSVNW SVDSNRTTLH TSYGRNHQKE QQQPCRFYPR 480 GKCYYGDRCR FLHEANRNQC

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MAKSYGNTIN LVEDDEQDYS EMEDSEFEDV NSDDSEEDPT YMDDLNEAKS KLSNLSIKTR  60
FISSGKIDDD DDDDEVSIIE EMSAPKLGIK DIKDFEEIQR IIDCGQVEKL KVEQCKIYLR  120
KNGLRLTGKK DTLIQRIKEH LEILNGGGER KFPQSSFVLN CKGDACMGDV VMFEQTVYEG  180
YSIASRSAIG PPCGKRLVVG RIVKESYGAA KQQHTFTVEV LWSKGYKSLP PLHPLLIKGR  240
NLYKLNTLRQ RWEDESERPR VLSEKHSRGS IARSNRESRI QEKTSKKTLK SSSRVCPKGQ  300
SSHQQKNHKC TIDHVSQQNK ENIAAASRVC LANKDKFCGF SDKFLHPRQP RNFESKENYV  360
RPVLIPQMFQ QNPASYHNNS IVPPIREHNR TAESMGSHYG FSDRFIHPRQ PRHFEYEENH  420
VRPVLIPQMF QQKPVLYHSE NGNLPTSVNW SVDSNRTTLH TSYGRNHQKE QQQPCRFYPR  480
GKCYYGDRCR FLHEANRNQC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685268.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 62
TrEMBL	A0A0K9QHJ2	1e-164	A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRING	XP_010685268.1	0.0	(Beta vulgaris)