PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_170040_shyp.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 233aa MW: 26333.5 Da PI: 5.2308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_170040_shyp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.7e-05	41	85	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 + erEr R+++N+ f++L ++l + ++ + Ka++L ++++ +k Bv7_170040_shyp.t1 41 VKAERERLKREQLNELFNKLASVLELN----QENNGKASVLNETIRLLK 85 5789********************997....344555555555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.45E-5	35	99	No hit	No description
SuperFamily	SSF47459	1.16E-9	37	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.058	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-6	41	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0038	43	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGSDIGDDPV LNEESDAPED AVDDGSQSRK RKRGKVPKKI VKAERERLKR EQLNELFNKL 60 ASVLELNQEN NGKASVLNET IRLLKDTVSH IQNLRKENET LLSESHYMAA EKNELKEENT 120 ALEVQIKKLQ NELEERLGQS KPDLNVSPPE SWQREMLTHF AEGHYSQTPT TDLSSQQQPI 180 LGPLYVIPMN PDLQAFQKVD ATPNNQPIAV SKPHARYPTP ADAWPLQLLS KQA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685315.1	1e-170	PREDICTED: transcription factor bHLH47
Refseq	XP_010685316.1	1e-170	PREDICTED: transcription factor bHLH47
TrEMBL	A0A0K9RH89	1e-115	A0A0K9RH89_SPIOL; Uncharacterized protein
STRING	XP_010685315.1	1e-170	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-54	bHLH family protein