PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_170440_ahzs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 405aa    MW: 45255.1 Da    PI: 6.9979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_170440_ahzs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++++ +G g+W++++   g+ R++k+c++rw +yl
  Bv7_170440_ahzs.t1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPTLAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding475.8e-1567109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg+++++E  l++d+++ lG++ W+ Ia+ ++ gRt++++k++w+
  Bv7_170440_ahzs.t1  67 RGSFSPQEAALIIDLHRILGNR-WSQIAKFLP-GRTDNEVKNFWN 109
                         899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.977961IPR017930Myb domain
SuperFamilySSF466897.11E-2911108IPR009057Homeodomain-like
SMARTSM007179.1E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-151461IPR001005SANT/Myb domain
CDDcd001673.35E-111761No hitNo description
PROSITE profilePS5129424.30962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2465116IPR009057Homeodomain-like
SMARTSM007171.0E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1367110IPR001005SANT/Myb domain
CDDcd001677.21E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PTLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIID LHRILGNRWS QIAKFLPGRT DNEVKNFWNS SIKKKLLSHI  120
GVGVSTTTSN TISNDLHLNY LPTITSSNNF LSHDHDIRGI TTFSPSLNNS IISTNMILTS  180
QQGHNHDHQI SNVNHLNPTT PAIQTFDHLN EMILNDFTPH NNLDNLIPPI TTYDQLLSSS  240
ARFQHLLNEV GINDHHVNDH PFSCPRSSVY PTSNDDDQAF MRRMKLTKMM LMLGDPIMPE  300
LETMGSLEEG EVCNTIPSSS TFHHDSYNDV SKALILSSCM SSNQLMECYD MHDNHVIIPS  360
VLPSSSSSPP QPRSLSLGVA AAAATTTAIT TALPCMWWQP SSTKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5373303e-31AB537330.1 Shorea laevis DNA, microsatellite: SHL00_17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685365.10.0PREDICTED: transcription factor MYB26
TrEMBLA0A0K9RW337e-86A0A0K9RW33_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685365.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-77myb domain protein 26