PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_170610_mkwz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 635aa MW: 69747.5 Da PI: 8.0819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_170610_mkwz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Bv7_170610_mkwz.t1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	11.5	0.0009	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ Bv7_170610_mkwz.t1 164 WKCDKCSKRYAVQSDWKAHSKVC 186 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.2E-5	87	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.47E-7	87	110	No hit	No description
PROSITE profile	PS50157	10.949	88	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	129	159	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.2E-4	152	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.47E-7	159	184	No hit	No description
SMART	SM00355	140	164	184	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MSNLTSAAAS GEASVSSSNN RGEPSNSIYP QHHQYFSHQL NQSEAEVEAE EQAQQPPAKK 60 KRNLPGNPDP EAEVIALSPK SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT 120 NKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKVCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEETA RAITTNSILS NPIASVAAAA 240 VGPSSTSHFI NLQQQQQQQL LNNQQHQDNP LHAYPLKREQ HQQHQQQQQN IMNLPPWLSC 300 PSMDPHNHQL PSPSSSSSIF HHQDQLMQHH QQQQQQQQNT NPSNPNMGPT FSSGGGIGGG 360 PYHSQAAASA HMSATALLQK AAQMGATMSN TATQQPHQQH QQHQQQQHHQ HQQSHVSDTN 420 SNTTTATTTT TTATTTTAGL FGMNLSSRDL EQQQQEMMPT SNSSHFVNQG LSSFGNKAAA 480 TPTTPNTSTN HHQQLRGTSP TQSPNQGPPP SSFFHDMMVN SLSSTYDQHD HHHDAFGIGS 540 MGMLGKKDPS SLAAFHQTLG GGGGDDGNGN CNGNVNGSVI NGGGNDGLTR DFLGLRPLSH 600 SDILTIAGLG NCITTNTPHH HHHDHQQDTH KSWQA

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MSNLTSAAAS GEASVSSSNN RGEPSNSIYP QHHQYFSHQL NQSEAEVEAE EQAQQPPAKK  60
KRNLPGNPDP EAEVIALSPK SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
NKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKVCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEETA RAITTNSILS NPIASVAAAA  240
VGPSSTSHFI NLQQQQQQQL LNNQQHQDNP LHAYPLKREQ HQQHQQQQQN IMNLPPWLSC  300
PSMDPHNHQL PSPSSSSSIF HHQDQLMQHH QQQQQQQQNT NPSNPNMGPT FSSGGGIGGG  360
PYHSQAAASA HMSATALLQK AAQMGATMSN TATQQPHQQH QQHQQQQHHQ HQQSHVSDTN  420
SNTTTATTTT TTATTTTAGL FGMNLSSRDL EQQQQEMMPT SNSSHFVNQG LSSFGNKAAA  480
TPTTPNTSTN HHQQLRGTSP TQSPNQGPPP SSFFHDMMVN SLSSTYDQHD HHHDAFGIGS  540
MGMLGKKDPS SLAAFHQTLG GGGGDDGNGN CNGNVNGSVI NGGGNDGLTR DFLGLRPLSH  600
SDILTIAGLG NCITTNTPHH HHHDHQQDTH KSWQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	160	221	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-33	160	221	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685384.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-115	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A0K9QFX1	0.0	A0A0K9QFX1_SPIOL; Uncharacterized protein
STRING	XP_010685384.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]