PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_170650_csxj.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

LBD

Protein Properties

Length: 362aa MW: 41013.9 Da PI: 4.7134

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_170650_csxj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l++ ++++am++++y+++ara+dPv G++++i++lq q++ k Bv7_170650_csxj.t1 31 ACAACKYQRRKCASDCALAPYFPHDRQRQFLNAHKLFGVSNITKIIRNLSPPDKDIAMRTIIYQSDARAKDPVGGCYRIIRELQYQIAYFK 121 7**************************************************************************************** PP DUF260 92 aelallkee 100 ael+++ ++ Bv7_170650_csxj.t1 122 AELDVVIQQ 130 *988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.388	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-37	31	127	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSNSCITNNT SSNHNHNHHH SSSRISNGTQ ACAACKYQRR KCASDCALAP YFPHDRQRQF 60 LNAHKLFGVS NITKIIRNLS PPDKDIAMRT IIYQSDARAK DPVGGCYRII RELQYQIAYF 120 KAELDVVIQQ LELCKAQVYH QQQQQQLYPG DGVDHNNNNE LVTCDNNNNN NSYQQYEGLM 180 RCYYYDQGNN NNNNNNEQQY MNMMLPISSC SEQNNGQLDQ NDQYSWVAPA NEEAVLASSN 240 SSTSHGECFV IKSEFVGECE GLEMKPQIQI GASNGGSYDI DEEREYGSKF DDDSSTHVDL 300 SCCDLQGDEL KFVPQQTTQL SEEEVVALKG EKIVVDNPEE ESFHHISEHD LRNAATMFTL 360 TN

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSNSCITNNT SSNHNHNHHH SSSRISNGTQ ACAACKYQRR KCASDCALAP YFPHDRQRQF  60
LNAHKLFGVS NITKIIRNLS PPDKDIAMRT IIYQSDARAK DPVGGCYRII RELQYQIAYF  120
KAELDVVIQQ LELCKAQVYH QQQQQQLYPG DGVDHNNNNE LVTCDNNNNN NSYQQYEGLM  180
RCYYYDQGNN NNNNNNEQQY MNMMLPISSC SEQNNGQLDQ NDQYSWVAPA NEEAVLASSN  240
SSTSHGECFV IKSEFVGECE GLEMKPQIQI GASNGGSYDI DEEREYGSKF DDDSSTHVDL  300
SCCDLQGDEL KFVPQQTTQL SEEEVVALKG EKIVVDNPEE ESFHHISEHD LRNAATMFTL  360
TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-25	32	131	12	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-25	32	131	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106507.1	0.0	PREDICTED: LOB domain-containing protein 22
TrEMBL	A0A0K9REV7	1e-100	A0A0K9REV7_SPIOL; Uncharacterized protein
STRING	XP_010686136.1	1e-153	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-55	LOB domain-containing protein 22